Evidence map›Paper›PMID 41460945›Full record

ArticlePLoS computational biology2025

A computational framework to study EGFR signaling distribution in egg chambers during dynamic interactions between soma and germline.

Nastassia Pouradier Duteil, Nicole T Revaitis, Mathew G Niepielko, Eric A Klein, Nir Yakoby, Benedetto Piccoli

Erratum issuedAbstract read
In one paragraph

Article in PLoS computational biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Nastassia Pouradier DuteilCenter for Computational and Integrative Biology, Rutgers, The State University of NJ, Camden, New Jersey, United States of America.
Nicole T RevaitisCenter for Computational and Integrative Biology, Rutgers, The State University of NJ, Camden, New Jersey, United States of America.
Mathew G NiepielkoCenter for Computational and Integrative Biology, Rutgers, The State University of NJ, Camden, New Jersey, United States of America.ORCID 0000-0002-1060-7768
Eric A KleinCenter for Computational and Integrative Biology, Rutgers, The State University of NJ, Camden, New Jersey, United States of America.
Nir YakobyCenter for Computational and Integrative Biology, Rutgers, The State University of NJ, Camden, New Jersey, United States of America.
Benedetto PiccoliCenter for Computational and Integrative Biology, Rutgers, The State University of NJ, Camden, New Jersey, United States of America.ORCID 0000-0002-6000-5394

Funding

AREA: Mechanisms underlying epithelial cells’ patterning and morphogenesisR15GM101597 · NIGMS · RUTGERS THE STATE UNIV OF NJ CAMDEN · PI YAKOBY, NIR · 2013 to 2017
$806k
NIGMS NIH HHS R15 GM101597
6 · The paper itself

Abstract

Forming organs requires the appropriate distribution of spatiotemporal signals leading to tissue patterning and morphogenesis. Advances in genetic tools contributed to our understanding of cell signaling and their associated genes. Yet, due to technical challenges, the contribution of dynamic morphological transformations of tissues during organ formation remains widely unexplored. Here, we develop a new mathematical approach to understand the variables that shape the dynamic distribution of ligand and signaling. We use the TGF-α-like ligand Gurken (GRK) and the activation of the epidermal growth factor receptor (EGFR) during Drosophila oogenesis to build the model. Our model accounts for GRK secretion from a moving source, its diffusion in the perivitelline space, and the activation of EGFR in the overlaying follicle cells. Furthermore, we also capture the rapid growth of the oocyte, which was a major challenge to integrate into a model. We modeled the dynamic distribution of GRK and EGFR activation by a series of mathematical equations. We used this model to study how perturbations of the egg chamber's morphological evolution impact cell signaling, which could not be achieved via genetic perturbation. We found that the relative movement of the follicle cells and the oocyte contributes to the distribution of EGFR signaling activation.

Indexed as

Drosophila ProteinsErbB ReceptorsModels, BiologicalReceptors, Invertebrate PeptideSignal TransductionAnimalsComputational BiologyComputer SimulationDrosophilaDrosophila melanogasterFemaleGerm CellsOocytesOogenesisOvarian FollicleTransforming Growth Factor alphaDrosophila ProteinsEgfr protein, DrosophilaErbB Receptorsgrk protein, DrosophilaReceptors, Invertebrate PeptideTransforming Growth Factor alpha

Identifiers

PMID41460945
PMCPMC12826490

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.