ArticleFrontiers in plant science2025
Integrative genomic and transcriptomic approaches decipher pre-harvest sprouting resistance in rice.
Article in Frontiers in plant science, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.
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18 authors.
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Abstract
Pre-harvest sprouting (PHS) seriously compromises rice yield and quality, increase susceptibility to insect pest and reduce seed viability. Beside agronomic control measures, the genetic makeup of rice plants serves as a fundamental determinant in conferring resistance to PHS. Therefore, integrating multi-omics strategies to construct high-resolution genetic variation maps, screen extreme-phenotype germplasm, and identify causal genes are pivotal for generating PHS-resistant breeding material. In this study, we performed whole-genome re-sequencing of 165 highly diverse indica rice accessions to construct a high-density genetic variation map, obtaining a dataset comprising 1,584,905 high-quality SNPs for subsequent association analysis. Genome-wide association studies (GWAS) further uncovered 21 candidate loci and multiple candidate genes associated with PHS, from which key candidate genes were prioritized. In particular, previously cloned PHS-related genes-
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