Evidence map›Paper›PMID 41457176›Full record

ArticleNature communications2025

Antibiotic contamination and antimicrobial resistance dynamics in the urban sewage microbiome in India.

Deepjyoti Paul, Daizee Talukdar, Ramani Shyam Kapuganti, Vaishali Gupta, Lekshmi Narendrakumar, Pradipta Jana, Pawan Kumar, Jyoti Singh, Shalini Kumari, Chandana Basak and 13 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
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  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

Deepjyoti PaulMicrobial Research Centre, BRIC-Translational Health Science and Technology Institute (THSTI), Faridabad, India.
Daizee TalukdarMicrobial Research Centre, BRIC-Translational Health Science and Technology Institute (THSTI), Faridabad, India.
Ramani Shyam KapugantiMicrobial Research Centre, BRIC-Translational Health Science and Technology Institute (THSTI), Faridabad, India.
Vaishali GuptaMicrobial Research Centre, BRIC-Translational Health Science and Technology Institute (THSTI), Faridabad, India.
Lekshmi NarendrakumarMicrobial Research Centre, BRIC-Translational Health Science and Technology Institute (THSTI), Faridabad, India.
Pradipta JanaMicrobial Research Centre, BRIC-Translational Health Science and Technology Institute (THSTI), Faridabad, India.
Pawan KumarMicrobial Research Centre, BRIC-Translational Health Science and Technology Institute (THSTI), Faridabad, India.
Jyoti SinghMicrobial Research Centre, BRIC-Translational Health Science and Technology Institute (THSTI), Faridabad, India.
Shalini KumariMicrobial Research Centre, BRIC-Translational Health Science and Technology Institute (THSTI), Faridabad, India.
Chandana BasakMicrobial Research Centre, BRIC-Translational Health Science and Technology Institute (THSTI), Faridabad, India.
Kajal KambojMicrobial Research Centre, BRIC-Translational Health Science and Technology Institute (THSTI), Faridabad, India.
Susmita BakshiMicrobial Research Centre, BRIC-Translational Health Science and Technology Institute (THSTI), Faridabad, India.
Shruti LalMicrobial Research Centre, BRIC-Translational Health Science and Technology Institute (THSTI), Faridabad, India.
Subhash TanwarMicrobial Research Centre, BRIC-Translational Health Science and Technology Institute (THSTI), Faridabad, India.
Roshan KumarMicrobial Research Centre, BRIC-Translational Health Science and Technology Institute (THSTI), Faridabad, India.
Prabhakar BabeleMicrobial Research Centre, BRIC-Translational Health Science and Technology Institute (THSTI), Faridabad, India.
Manish BajpaiMicrobial Research Centre, BRIC-Translational Health Science and Technology Institute (THSTI), Faridabad, India.
Yashwant KumarMicrobial Research Centre, BRIC-Translational Health Science and Technology Institute (THSTI), Faridabad, India.
Ankur MutrejaCambridge Institute for Therapeutic Immunology & Infectious Disease (CITIID), Department of Medicine, University of Cambridge, Cambridge, UK.ORCID http://orcid.org/0000-0002-1118-8075
Sukhendu MandalDepartment of Microbiology, University of Calcutta, College Street, Kolkata, India.
Nitya WadhwaMicrobial Research Centre, BRIC-Translational Health Science and Technology Institute (THSTI), Faridabad, India.ORCID http://orcid.org/0000-0002-9435-1842
Sanjay K BanerjeeDepartment of Biotechnology, National Institute of Pharmaceutical Education and Research (NIPER-Guwahati), Changsari, Guwahati, Assam, India.
Bhabatosh DasMicrobial Research Centre, BRIC-Translational Health Science and Technology Institute (THSTI), Faridabad, India. bhabatosh@thsti.res.in.ORCID http://orcid.org/0000-0002-2447-5380

Funding

Department of Biotechnology, Ministry of Science and Technology (DBT) GCI-13012/2/2025-GClDepartment of Biotechnology, Ministry of Science and Technology (DBT) RAD/22017/19/2022-KGD-DBT
6 · The paper itself

Abstract

The emergence and spread of antimicrobial resistance (AMR) in clinically important bacterial pathogens has severely compromised the effectiveness of commonly used antibiotics in healthcare. Acquisition and transmission of AMR genes (ARGs) are often facilitated by sublethal concentrations of antibiotics in microbially dense environments. In this study, we use sewage samples (n = 381) collected from six Indian states between June and December 2023 to assess the concentration of eleven antibiotics, microbial diversity, and ARG richness. We find antibiotics from seven drug classes and detect over 2000 bacterial amplicon sequence variants (ASVs). Metagenomic (n = 220) and isolated genome sequences (n = 305) of aerobic and anaerobic bacterial species identify 82 ARGs associated with 80 mobile genetic elements (MGEs). These MGEs are predominantly present in multidrug-resistant (MDR) bacterial pathogens. Comparative core genome analysis of MDR bacterial isolates (n = 7166) shows strong genetic similarity between sewage-derived strains and clinical pathogens. Our results highlight sewage as a significant reservoir for ARGs, where genetic exchanges occur and facilitate the evolution and spread of AMR pathogens in both community and healthcare settings. Additionally, the dipstick-based assay developed for ARGs detection can be used for sewage surveillance in low-resource settings for better understanding of resistance prevalence.

Indexed as

Anti-Bacterial AgentsBacteriaDrug Resistance, BacterialMicrobiotaSewageCitiesDrug Resistance, Multiple, BacterialHumansIndiaInterspersed Repetitive SequencesMetagenomicsMicrobial Sensitivity TestsAnti-Bacterial AgentsSewage

Identifiers

PMID41457176
PMCPMC12867989

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.