Evidence map›Paper›PMID 41456015›Full record

ArticleFluids and barriers of the CNS2025

Automated deep learning pipeline for callosal angle quantification.

Siavash Shirzadeh Barough, Murat Bilgel, Catalina Ventura, Lucas An, Ameya Moghekar, Marilyn S Albert, Michael I Miller, Mark G Luciano, Abhay Moghekar

Abstract read
In one paragraph

Article in Fluids and barriers of the CNS, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

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2 · The registry

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3 · Its place in the literature

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4 · The record

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5 · Who and what money

Authors and funding

9 authors.

Siavash Shirzadeh BaroughDepartment of Neurology, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Murat BilgelLaboratory of Behavioral Neuroscience, National Institute on Aging, NIH, Baltimore, MD, 21224, USA.
Catalina VenturaDepartment of Neurology, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Lucas AnDepartment of Neurology, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Ameya MoghekarDepartment of Neurology, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Marilyn S AlbertDepartment of Neurology, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Michael I MillerDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USA.
Mark G LucianoDepartment of Neurosurgery, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Abhay MoghekarDepartment of Neurology, Johns Hopkins University School of Medicine, Baltimore, MD, USA. am@jhmi.edu.

Funding

Project 2 MeasurementU19AG033655 · NIA · JOHNS HOPKINS UNIVERSITY · PI Mei Cheng Wang · 2014 to 2026
$51.5M
NIA NIH HHS U19 AG033655NIA NIH HHS U19-AG033655NINDS NIH HHS U01-NS12276
6 · The paper itself

Abstract

backgroundNormal pressure hydrocephalus (NPH) is a potentially treatable neurodegenerative disorder that remains underdiagnosed due to its clinical overlap with other conditions and the labor-intensive nature of manual imaging analyses. Imaging biomarkers, such as the callosal angle (CA), Evans Index (EI), and Disproportionately Enlarged Subarachnoid Space Hydrocephalus (DESH), play a crucial role in NPH diagnosis but are often limited by subjective interpretations. To address these challenges, we developed a fully automated and robust deep learning framework for measuring the CA directly from raw T1 MPRAGE scans.

methodsOur method integrates two complementary modules. First, a BrainSignsNET model is employed to accurately detect key anatomical landmarks, notably the anterior commissure (AC) and posterior commissure (PC). Preprocessed 3D MRI scans, reoriented to the Right Anterior Superior (RAS) system and resized to standardized cubes while preserving aspect ratios, serve as input for landmark localization. After detecting these landmarks, a coronal slice, perpendicular to the AC-PC line at the PC level, is extracted for subsequent analysis. Second, a UNet-based segmentation network, featuring a pretrained EfficientNetB0 encoder, generates multiclass masks of the lateral ventricles from the coronal slices which then used for calculation of the CA.

resultsTraining and internal validation were performed using datasets from the Baltimore Longitudinal Study of Aging (BLSA) and BIOCARD, while external validation utilized 376 clinical MRI scans from Johns Hopkins Bayview Hospital, as well as PENS trial. Our framework achieved high concordance with manual measurements, demonstrating a strong correlation (r = 0.98, p < 0.001) and a mean absolute error (MAE) of 3.26 (SD 1.89) degrees. Moreover, error analysis confirmed that CA measurement performance was independent of patient age, gender, and EI, underscoring the broad applicability of this method.

conclusionsThese results indicate that our fully automated CA measurement framework is a reliable and reproducible alternative to manual methods, outperforms reported interobserver variability in assessing the CA, and offers significant potential to enhance early detection and diagnosis of NPH in both research and clinical settings.

Indexed as

Corpus CallosumDeep LearningHydrocephalus, Normal PressureImage Processing, Computer-AssistedMagnetic Resonance ImagingNeuroimagingAgedFemaleHumansMaleMiddle AgedCallosal angleDeep learningNeuroimagingNormal pressure hydrocephalus

Identifiers

PMID41456015
PMCPMC12853608

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.