Evidence map›Paper›PMID 41455812›Full record

ArticleNPJ digital medicine2025

Context matching is not reasoning when performing generalized clinical evaluation of generative language models.

Andrew Wen, Qiuhao Lu, Yu-Neng Chuang, Guanchu Wang, Jiayi Yuan, Jiamu Zhang, Liwei Wang, Sunyang Fu, Kurt D Miller, Heling Jia and 5 more

Abstract read
In one paragraph

Article in NPJ digital medicine, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors.

Andrew WenCenter for Translational AI Excellence and Applications in Medicine, D. Bradley McWilliams School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX, USA.
Qiuhao LuCenter for Translational AI Excellence and Applications in Medicine, D. Bradley McWilliams School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX, USA.
Yu-Neng ChuangDepartment of Computer Science, George R. Brown School of Engineering and Computing, Rice University, Houston, TX, USA.
Guanchu WangDepartment of Computer Science, George R. Brown School of Engineering and Computing, Rice University, Houston, TX, USA.
Jiayi YuanDepartment of Computer Science, George R. Brown School of Engineering and Computing, Rice University, Houston, TX, USA.
Jiamu ZhangDepartment of Computer Science, George R. Brown School of Engineering and Computing, Rice University, Houston, TX, USA.
Liwei WangCenter for Translational AI Excellence and Applications in Medicine, D. Bradley McWilliams School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX, USA.
Sunyang FuCenter for Translational AI Excellence and Applications in Medicine, D. Bradley McWilliams School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX, USA.
Kurt D MillerDepartment of AI & Informatics Research, Mayo Clinic, Rochester, MN, USA.
Heling JiaDepartment of AI & Informatics Research, Mayo Clinic, Rochester, MN, USA.
Steven D BedrickDepartment of Medical Informatics and Clinical Epidemiology, School of Medicine, Oregon Health & Science University, Portland, OR, USA.
William R HershDepartment of Medical Informatics and Clinical Epidemiology, School of Medicine, Oregon Health & Science University, Portland, OR, USA.
Kirk E RobertsCenter for Translational AI Excellence and Applications in Medicine, D. Bradley McWilliams School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX, USA.
Xia Hu *Department of Computer Science, George R. Brown School of Engineering and Computing, Rice University, Houston, TX, USA. Xia.Hu@rice.edu.
Hongfang Liu *Center for Translational AI Excellence and Applications in Medicine, D. Bradley McWilliams School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX, USA. Hongfang.Liu@uth.tmc.edu.

Funding

Semi-structured Information Retrieval in Clinical Text for Cohort IdentificationR01LM011934 · NLM · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI HERSH, WILLIAM R, LIU, HONGFANG · 2014 to 2025
$5.1M
Predictive modeling of Alzheimer's Disease Related Dementias (ADRD) in the elderly population empowered by knowledge-driven data miningR01HG012748 · NHGRI · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI HONGFANG LIU · 2023 to 2026
$3.1M
Facilitate Observational Studies of Alzheimer's Disease and Alzheimer's Disease-Related Dementias Using Ontology and Natural Language ProcessingR01AG072799 · NIA · YALE UNIVERSITY · PI HONGFANG LIU, Cui Tao · 2025 to 2026
$1.7M
Trustworthy and High-Performance Question Answering for Electronic Health RecordsR01LM014508 · NLM · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI Kirk Edward Roberts · 2024 to 2026
$1.1M
Cancer Prevention and Research Institute of Texas RR230020NHGRI NIH HHS R01 HG012748NHGRI NIH HHS R01HG012748NIA NIH HHS R01 AG072799NIA NIH HHS R01AG072799NLM NIH HHS R01 LM011934NLM NIH HHS R01 LM014508U.S. National Library of Medicine R01LM011934
6 · The paper itself

Abstract

Current discussion surrounding the clinical capabilities of generative language models(GLMs) predominantly centers around multiple-choice question-answer(MCQA) benchmarks derived from clinical licensing examinations. While accepted for human examinees, characteristics unique to GLMs bring into question the validity of such benchmarks. Here, we validate five benchmarks using eight GLMs, ablating for parameter size and reasoning capabilities, validating via prompt permutation three key assumptions that underpin the generalizability of MCQA-based assessments: that knowledge is applied, not memorized, that semantic consistency will lead to consistent answers, and that situations with no answers can be recognized. While large models are more resilient to our perturbations compared to small models, we globally invalidate these assumptions, with implications for reasoning models. Additionally, despite retaining the knowledge, small models are prone to memorization. All models exhibit significant failure in null-answer scenarios. We then suggest several adaptations for more robust benchmark designs, more reflective of real-world conditions.

Identifiers

PMID41455812
PMCPMC12827943

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.