Evidence map›Paper›PMID 41455696›Full record

ArticleNature communications2025

General variation in the Fusarium wilt rhizosphere microbiome.

Lv Su, Haichao Feng, Huatai Li, Fu Yang, Xiaoqian Yan, Xudong Wang, Pengcheng Li, Kesu Wang, Xia Shu, Yunpeng Liu and 3 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Lv Su *College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, Jiangsu, The People's Republic of China.ORCID http://orcid.org/0000-0002-1921-3562
Haichao Feng *College of Agriculture, Henan University, Kaifeng, Henan, China.
Huatai LiState Key Laboratory of Efficient Utilization of Arid and Semi-arid Arable Land in Northern China, The Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, China.
Fu YangState Key Laboratory of Efficient Utilization of Arid and Semi-arid Arable Land in Northern China, The Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, China.
Xiaoqian YanBiotechnology Research Institute/National Key Laboratory of Agricultural Microbiology, Chinese Academy of Agricultural Sciences, Beijing, China.
Xudong WangBiotechnology Research Institute/National Key Laboratory of Agricultural Microbiology, Chinese Academy of Agricultural Sciences, Beijing, China.
Pengcheng LiBiotechnology Research Institute/National Key Laboratory of Agricultural Microbiology, Chinese Academy of Agricultural Sciences, Beijing, China.
Kesu WangCollege of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, Jiangsu, The People's Republic of China.
Xia ShuState Key Laboratory of Efficient Utilization of Arid and Semi-arid Arable Land in Northern China, The Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, China.
Yunpeng LiuState Key Laboratory of Efficient Utilization of Arid and Semi-arid Arable Land in Northern China, The Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, China.ORCID http://orcid.org/0000-0002-3016-7165
Qirong ShenCollege of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, Jiangsu, The People's Republic of China.ORCID http://orcid.org/0000-0002-5662-9620
Yongliang YanBiotechnology Research Institute/National Key Laboratory of Agricultural Microbiology, Chinese Academy of Agricultural Sciences, Beijing, China. yanyongliang@caas.cn.ORCID http://orcid.org/0000-0002-4297-6648
Ruifu ZhangCollege of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, Jiangsu, The People's Republic of China. rfzhang@njau.edu.cn.ORCID http://orcid.org/0000-0002-3334-4286

Funding

National Natural Science Foundation of China (National Science Foundation of China) 32172661National Natural Science Foundation of China (National Science Foundation of China) 32270125National Natural Science Foundation of China (National Science Foundation of China) 42207359
6 · The paper itself

Abstract

The dominant bacteria enriched in the Fusarium wilt plants' rhizosphere are of increasing interest, as they adapt well to the diseased rhizosphere. However, general information about these bacteria is still lacking. Here, we perform a meta-analysis of Fusarium wilt plants rhizosphere and comprehensive studies to obtain information about the robust variation in the rhizosphere microbiome of Fusarium wilt plants. We demonstrate that Fusarium infection reproducibly changes the rhizosphere bacterial community composition. The rhizosphere microbiomes of Fusarium wilt plants are characterized by the enrichment of Flavobacterium, gene cassettes involved in antioxidant functions related to sulfur metabolism and the root secreted tocopherol acetate. We further isolate antagonistic Flavobacterium anhuiense from the diseased tomato rhizosphere, and reveal that the growth of F. anhuiense and the expression of genes related to carbohydrate metabolism in this strain are significantly stimulated by tocopherol acetate. Furthermore, the inhibitory effect of F. anhuiense against F. oxysporum and F. anhuiense population enhancement by tocopherol acetate are confirmed in planta. The robust variation in the rhizosphere microbiome elucidates key principles governing the general assembly mechanism of the microbiome in the Fusarium wilt plants' rhizosphere.

Indexed as

FusariumMicrobiotaPlant DiseasesRhizosphereSolanum lycopersicumFlavobacteriumPlant RootsSoil MicrobiologyTocopherolsTocopherols

Identifiers

PMID41455696
PMCPMC12847888

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.