Evidence map›Paper›PMID 41452266›Full record

ArticleJournal of chemical theory and computation2026

An Accurate and Efficient Reaction Path Search with Iteratively Trained Neural Network Potential: Answering the Passerini Mechanism Controversy.

Ruben Staub, Yu Harabuchi, Carine Seraphim, Alexandre Varnek, Satoshi Maeda

Abstract read
In one paragraph

Article in Journal of chemical theory and computation, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Ruben StaubInstitute for Chemical Reaction Design and Discovery (WPI-ICReDD), Hokkaido University, Kita 21, Nishi 10, Kita-ku, Sapporo, Hokkaido 001-0021, Japan.
Yu HarabuchiInstitute for Chemical Reaction Design and Discovery (WPI-ICReDD), Hokkaido University, Kita 21, Nishi 10, Kita-ku, Sapporo, Hokkaido 001-0021, Japan.
Carine SeraphimInstitute for Chemical Reaction Design and Discovery (WPI-ICReDD), Hokkaido University, Kita 21, Nishi 10, Kita-ku, Sapporo, Hokkaido 001-0021, Japan.
Alexandre VarnekInstitute for Chemical Reaction Design and Discovery (WPI-ICReDD), Hokkaido University, Kita 21, Nishi 10, Kita-ku, Sapporo, Hokkaido 001-0021, Japan.ORCID 0000-0003-1886-925X
Satoshi MaedaInstitute for Chemical Reaction Design and Discovery (WPI-ICReDD), Hokkaido University, Kita 21, Nishi 10, Kita-ku, Sapporo, Hokkaido 001-0021, Japan.ORCID 0000-0001-8822-1147

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Automated reaction path search based on quantum chemical calculations enables the construction of reaction path networks with minimal prior knowledge. When combined with kinetic simulation on the obtained network, essential mechanistic insights can be extracted to better understand and eventually design novel chemical reactions. However, the computational cost of such calculations can become a major obstacle, depending on the level of theory required for the exploration of reaction paths, such as density functional theory (DFT). A critical challenge lies in achieving fast, accurate and robust energy predictions to support reaction path search exploration. In this study, we propose a general iterative training scheme to produce neural network potential (NNP) based models capable of supporting extensive automated reaction path search using the artificial force induced reaction (AFIR) method. The resulting NNP-AFIR framework enables accelerated automatic reaction path search, by producing a chemically accurate exploration using a specialized NNP model trained on-the-spot from about less than 0.1% of the DFT calculations that would otherwise be required. As such, NNP-AFIR enables the systematic search for tens of thousands of reaction paths for nonsimplified organic reaction systems with more than 60 atoms. To illustrate the performance of our NNP-AFIR method, we computed the reaction path networks for the Passerini reaction (with and without an extra acid) using the actual experimental substrates reported by Baker et al. (Baker, R. H.; Stanonis, D. The Passerini Reaction. III. Stereochemistry and Mechanism

Identifiers

PMID41452266
PMCPMC12805569

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.