Evidence map›Paper›PMID 41450973›Full record

ArticleComputer assisted and robotic endoscopy and clinical image-based procedures : 4th International Workshop, CARE 2017, and 6th International Workshop, CLIP 2017, held in conjunction with MICCAI 2017 Quebec City, QC, Canada, September 14, ...2017

Automated Characterization of Pyelocalyceal Anatomy Using CT Urograms to Aid in Management of Kidney Stones.

Yuankai Huo, Vaughn Braxton, S Duke Herrell, Bennett Landman, Smita De

Abstract read
In one paragraph

Article in Computer assisted and robotic endoscopy and clinical image-based procedures : 4th International Workshop, CARE 2017, and 6th International Workshop, CLIP 2017, held in conjunction with MICCAI 2017 Quebec City, QC, Canada, September 14, ..., 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Yuankai HuoVanderbilt University, Nashville, TN, USA.ORCID 0000-0002-2096-8065
Vaughn BraxtonVanderbilt University Medical Center, Nashville, TN, USA.ORCID 0000-0001-6747-4321
S Duke HerrellVanderbilt University Medical Center, Nashville, TN, USA.ORCID 0000-0002-0646-4530
Bennett LandmanVanderbilt University, Nashville, TN, USA.ORCID 0000-0001-5733-2127
Smita DeVanderbilt University Medical Center, Nashville, TN, USA.ORCID 0000-0002-3229-2728

Funding

VANDERBILT UNIVERSITY CTSA FOR PEDIATRIC RESEARCHUL1RR024975 · NCRR · VANDERBILT UNIVERSITY · PI BERNARD, GORDON RAPHAEL · 2007 to 2011
$45.7M
The Vanderbilt Institute for Clinical and Translational Research (VICTR)UL1TR000445 · NCATS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI BERNARD, GORDON RAPHAEL · 2012 to 2016
$41.4M
An Interactive Web-Based Game for Collaborative Labeling of Medical ImagesR21NS064534 · NINDS · JOHNS HOPKINS UNIVERSITY · PI PRINCE, JERRY L · 2009 to 2010
$436k
Quantitative Image Analysis Techniques for Optic Nerve DiseaseR21EY024036 · NEI · VANDERBILT UNIVERSITY · PI LANDMAN, BENNETT A. · 2014 to 2015
$410k
Resource Development for the Java Image Science ToolkitR03EB012461 · NIBIB · VANDERBILT UNIVERSITY · PI LANDMAN, BENNETT A. · 2010 to 2010
$147k
NCATS NIH HHS UL1 TR000445NCRR NIH HHS UL1 RR024975NEI NIH HHS R21 EY024036NIBIB NIH HHS R03 EB012461NINDS NIH HHS R21 NS064534
6 · The paper itself

Abstract

Nephrolithiasis is a costly and prevalent disease that is associated with significant morbidity including pain, infection, and kidney injury. While surgical treatment of kidney stones is generally based on the size and quality of the stones, studies have suggested that specific characteristics of the pyelocalyceal anatomy (i.e. urinary drainage system), such as the infundibulopelvic angle (IPA), can influence the success rate of various treatment modalities. However, the traditional methods of quantifying such anatomic features have typically relied on manual measurements using 2-dimensional (2D) images of a 3-dimensional (3D) system, which can be cumbersome and potentially inaccurate. In this paper, we propose a novel algorithm that automatically identifies and isolates the 3D volume and central frame of the urinary drainage system from computerized tomography (CT) Urograms, which then allows for 3D characterization of the pyelocalyceal anatomy. First, the kidney and pyelocalyceal system were segmented from adjacent soft tissues using an automated algorithm. A centerline tree structure was then generated from the segmented pyelocalyceal anatomy. Finally, the IPA was measured using the derived reconstructions and tree structure. 8 of 11 pyelocalyceal systems were successfully segmented and used to measure the IPA, suggesting that it is technically feasible to use our algorithm to automatically segment the pyelocalyceal anatomy from target images and determine its 3D central frame for anatomic characterization. To the best of our knowledge, this is the first method that allows for an automated characterization of the isolated 3D pyelocalyceal structure from CT images.

Indexed as

Automated segmentationKidney stonesPyelocalyceal anatomy

Identifiers

PMID41450973
PMCPMC12737793

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.