ArticleBioinformatics (Oxford, England)2026
BPSS: a Nextflow pipeline for Bacterial Peptide Sequence Selection to detect protein diversity.
Article in Bioinformatics (Oxford, England), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.
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Who cites it
1 citing paper in PubMed.
- PEPTiGEN: a tool for mining antimicrobial resistance PEPTides using GENe data of public available repositories.Bioinformatics (Oxford, England) · 2026Article
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6 authors.
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Abstract
motivationSequence variability can be extremely high, particularly in bacteria due to the rapid accumulation of mutations linked to their high replication rate and environmental selection pressure, which often favors diversifying selection. For most species, there are no automated, computationally efficient tools available for constructing a nonredundant database covering the allelic variability of target proteins.
resultsWe have thus developed Bacterial Peptide Sequence Selection, a Nextflow pipeline to define a minimal list of peptide sequences for detecting all variants of a protein of interest. AVAILABILITY AND IMPLEMENTATION: All the code and containers used are freely available on Gitlab from https://gitbio.ens-lyon.fr/ciri/stapath/bpss or on Zenodo (10.5281/zenodo.16894981) under GPLv3 open-source license and DockerHub platform from https://hub.docker.com/u/stapath.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.