Evidence map›Paper›PMID 41449383›Full record

ArticleBMC biotechnology2025

Explainable deep learning ensemble framework for accurate classification of wild poisonous mushroom species.

Aras Fahrettin Korkmaz, Fatih Ekinci, Eda Kumru, Abdullah Aydoğan, Hasna Sena Kaymak, Mustafa Sevindik, Mehmet Serdar Güzel, Ilgaz Akata

Abstract read
In one paragraph

Article in BMC biotechnology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Aras Fahrettin KorkmazFaculty of Health Sciences, Dietetics and Nutrition Department, İstanbul Kültür University, Şirinevler Campus, Istanbul, 34191, Türkiye.
Fatih EkinciInstitute of Artificial Intelligence, Ankara University, Ankara, 06100, Türkiye.
Eda KumruGraduate School of Natural and Applied Sciences, Ankara University, Ankara, 06830, Türkiye.
Abdullah AydoğanDepartment of Computer Engineering, Faculty of Engineering, Ankara University, Ankara, 06830, Türkiye.
Hasna Sena KaymakDepartment of Computer Engineering, Faculty of Engineering, Ankara University, Ankara, 06830, Türkiye.
Mustafa SevindikDepartment of Biology, Faculty of Engineering and Natural Sciences, Osmaniye Korkut Ata University, Ankara, Türkiye. sevindik27@gmail.com.
Mehmet Serdar GüzelDepartment of Computer Engineering, Faculty of Engineering, Ankara University, Ankara, 06830, Türkiye.
Ilgaz AkataDepartment of Biology, Faculty of Science, Ankara University, Ankara, 06100, Türkiye.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This study introduces an explainable deep learning framework for the accurate classification of wild poisonous mushroom species, contributing to food safety. A balanced dataset of 3600 high-resolution images representing 18 species was employed, split into training, validation, and test subsets. To enhance variability and reduce overfitting, the images were expanded using advanced augmentation techniques (rotation, flipping, brightness/contrast adjustments, noise injection, etc.), increasing the training set to 7200 samples. Four pretrained CNN architectures DenseNet121, EfficientNet-B3, MobileNet-V3, and ShuffleNet-V2 were fine-tuned via transfer learning and evaluated with multiple performance metrics. Among the individual models, EfficientNet-B3 achieved the highest accuracy of 93.0%. However, ensemble strategies based on soft voting consistently outperformed single models. The four-model ensemble (DenseNet121, EfficientNet-B3, MobileNet-V3, ShuffleNet-V2) achieved the best results with 95.67% accuracy, 95.42% MCC, and a log loss of 0.175. Explainable AI methods (Grad-CAM, Grad-CAM++) revealed that classification decisions corresponded to biologically meaningful regions, thereby improving interpretability and reliability. This study holds direct life-saving potential by reducing poisoning incidents caused by misidentifications. In addition, it contributes to food safety by supporting reliable identification of toxic species within the agricultural and food supply chain. Furthermore, it pioneers the integration of AI methodologies in fungal taxonomy, providing a robust foundation for future ecological, agricultural, and biotechnological research.

Indexed as

AgaricalesDeep LearningClassification AlgorithmsConvolutional Neural NetworksEnsemble LearningComputer visionDeep learningEnsemble modelsExplainable AIMushroom classificationPoisonous mushroom

Identifiers

PMID41449383
PMCPMC12849327

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.