Evidence map›Paper›PMID 41445736›Full record

ArticleFrontiers in immunology2025

Single-cell transcriptomics reveals immune remodeling of the murine lung microenvironment following chronic house dust mite exposure.

Han Chang, Liping Zeng, Zahra Malakoutikhah, Chanond A Nasamran, Scott Herdman, Maripat Corr, Kathleen M Fisch, Nicholas J G Webster, Eyal Raz, Samuel Bertin

Abstract read
In one paragraph

Article in Frontiers in immunology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Han ChangDivision of Rheumatology, Autoimmunity, and Inflammation, Department of Medicine, University of California, San Diego, La Jolla, CA, United States.
Liping ZengDivision of Rheumatology, Autoimmunity, and Inflammation, Department of Medicine, University of California, San Diego, La Jolla, CA, United States.
Zahra MalakoutikhahDivision of Rheumatology, Autoimmunity, and Inflammation, Department of Medicine, University of California, San Diego, La Jolla, CA, United States.
Chanond A NasamranCenter for Computational Biology and Bioinformatics, School of Medicine, University of California, San Diego, La Jolla, CA, United States.
Scott HerdmanDivision of Rheumatology, Autoimmunity, and Inflammation, Department of Medicine, University of California, San Diego, La Jolla, CA, United States.
Maripat CorrDivision of Rheumatology, Autoimmunity, and Inflammation, Department of Medicine, University of California, San Diego, La Jolla, CA, United States.
Kathleen M FischCenter for Computational Biology and Bioinformatics, School of Medicine, University of California, San Diego, La Jolla, CA, United States.
Nicholas J G WebsterDivision of Endocrinology, Department of Medicine, University of California, San Diego, La Jolla, CA, United States.
Eyal RazDivision of Rheumatology, Autoimmunity, and Inflammation, Department of Medicine, University of California, San Diego, La Jolla, CA, United States.
Samuel BertinDivision of Rheumatology, Autoimmunity, and Inflammation, Department of Medicine, University of California, San Diego, La Jolla, CA, United States.

Funding

VIRAL MALIGNANCYP30CA023100 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DIANE M SIMEONE · 1985 to 2026
$124.9M
UC San Diego Clinical and Translational Research InstituteUL1TR001442 · NCATS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI FIRESTEIN, GARY S, HOGARTH, MICHAEL · 2015 to 2024
$88.3M
VirologyP30AI036214 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SUSAN JANET LITTLE · 1994 to 2026
$78.4M
Rheumatic Diseases Research Training GrantT32AR064194 · NIAMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GARY S FIRESTEIN, Monica Guma · 2013 to 2026
$3.8M
A novel pathway of Th17/Th2 induction: The role of cAMP signaling in DCR01HL141999 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI RAZ, EYAL, WEBSTER, NICHOLAS J · 2019 to 2022
$2.9M
Chronic Exposure to House Dust Mites: A New Risk Factor for Lung Cancer in Never SmokersU01CA276642 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Samuel P Bertin, Eyal Raz · 2023 to 2026
$2.4M
Control of mucosal immunity by Gas- vs Gai-linked GPCR signaling in dendritic cellsU01AI125860 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI RAZ, EYAL · 2016 to 2020
$2.3M
Illumina NovaSeq 6000 Sequencing SystemS10OD026929 · OD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI JEPSEN, KRISTEN LYNN · 2019 to 2019
$600k
BLRD VA I01 BX004848BLRD VA IK6 BX005224NCATS NIH HHS UL1 TR001442NCI NIH HHS P30 CA023100NCI NIH HHS U01 CA276642NHLBI NIH HHS R01 HL141999NIAID NIH HHS P30 AI036214NIAID NIH HHS U01 AI125860NIAMS NIH HHS T32 AR064194NIH HHS S10 OD026929
6 · The paper itself

Abstract

Introduction: House dust mite (HDM) is a common environmental aeroallergen strongly associated with asthma and chronic airway inflammation. While HDM exposure is known to induce T helper 2 (Th2)-mediated eosinophilic inflammation, its chronic effects on interleukin-1β (IL-1β)-associated neutrophilic inflammation remain poorly understood. This study used single-cell RNA sequencing (scRNA-seq) to investigate how chronic HDM exposure remodels the murine lung immune microenvironment, with a focus on the role of IL-1β in shaping HDM-driven immune responses. Methods: Wild-type and Results: Our analysis demonstrates that chronic HDM exposure promotes the recruitment and activation of diverse immune cell populations in the lungs, including neutrophils, M2-polarized macrophages, B-2 (follicular) B cells, and multiple subsets of regulatory and effector CD4⁺ T cells. These populations contribute differently to the development or resolution of chronic lung inflammation through IL-1β-dependent and -independent mechanisms. scRNA-seq indicated that IL-1β signaling is critical for sustaining neutrophil and Th17 responses, whereas Discussion: These findings demonstrate that chronic HDM exposure profoundly remodels the lung immune microenvironment through IL-1β-dependent and -independent mechanisms. The effects are context-dependent and modulated by the endotoxin content of HDM extracts, highlighting the complex immunomodulatory effects of HDM in inducing chronic lung inflammation.

Indexed as

LungPyroglyphidaeTranscriptomeAnimalsCellular MicroenvironmentDisease Models, AnimalGene Expression ProfilingInterleukin-1betaMiceMice, Inbred C57BLMice, KnockoutSingle-Cell AnalysisInterleukin-1betachronic inflammationhouse dust miteinterleukin-1βlung immune microenvironmentsingle-cell RNA sequencing

Identifiers

PMID41445736
PMCPMC12723145

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.