Evidence map›Paper›PMID 41444611›Full record

ArticleNature communications2025

Cryo-EM structures of NHEJ assemblies with nucleosomes.

Chloe Hall, Philippe Frit, Antonia Kefala-Stavridi, Amandine Pelletier, Steven W Hardwick, Himani Amin, Matthew K Bilyard, Taiana Maia De Oliviera, Ammarah Tariq, Sayma Zahid and 11 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Chloe HallLeicester Institute for Structural and Chemical Biology, Department of Molecular and Cell Biology, University of Leicester, Leicester, UK.
Philippe FritInstitut de Pharmacologie et Biologie Structurale (IPBS), Université de Toulouse, CNRS, Université Toulouse III - Paul Sabatier (UT3), Toulouse, France.ORCID http://orcid.org/0000-0002-6571-8860
Antonia Kefala-StavridiDepartment of Biochemistry, University of Cambridge; Sanger Building, Cambridge, UK.
Amandine PelletierCancer Research Center of Marseille, Department of Genome Integrity, CNRS UMR7258, Inserm U1068, Institut Paoli-Calmettes, Aix Marseille Univ, Marseille, France.
Steven W HardwickDepartment of Biochemistry, University of Cambridge; Sanger Building, Cambridge, UK.ORCID http://orcid.org/0000-0001-9246-1864
Himani AminLeicester Institute for Structural and Chemical Biology, Department of Molecular and Cell Biology, University of Leicester, Leicester, UK.ORCID http://orcid.org/0000-0002-5467-6642
Matthew K BilyardDepartment of Chemistry, University of Cambridge, Cambridge, UK.
Taiana Maia De OlivieraAstraZeneca R&D, Discovery Sciences, Mechanistic and Structural Biology, Cambridge, UK.ORCID http://orcid.org/0000-0003-3231-8112
Ammarah TariqLeicester Institute for Structural and Chemical Biology, Department of Molecular and Cell Biology, University of Leicester, Leicester, UK.ORCID http://orcid.org/0000-0003-0657-5764
Sayma ZahidLeicester Institute for Structural and Chemical Biology, Department of Molecular and Cell Biology, University of Leicester, Leicester, UK.ORCID http://orcid.org/0000-0002-1354-9209
Dimitri Y ChirgadzeDepartment of Biochemistry, University of Cambridge; Sanger Building, Cambridge, UK.ORCID http://orcid.org/0000-0001-9942-0993
Shankar BalasubramanianDepartment of Chemistry, University of Cambridge, Cambridge, UK.ORCID http://orcid.org/0000-0002-0281-5815
Katheryn MeekCollege of Veterinary Medicine, Department of Microbiology & Molecular Genetics, Department of Pathobiology & Diagnostic Investigation, Michigan State University, East Lansing, MI, USA.ORCID http://orcid.org/0000-0002-0454-4414
Virginie RoparsUniversité Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), Gif-sur-Yvette, France.
Jean-Baptiste CharbonnierUniversité Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), Gif-sur-Yvette, France.ORCID http://orcid.org/0000-0002-5219-1983
Mauro ModestiCancer Research Center of Marseille, Department of Genome Integrity, CNRS UMR7258, Inserm U1068, Institut Paoli-Calmettes, Aix Marseille Univ, Marseille, France.ORCID http://orcid.org/0000-0002-4964-331X
Patrick CalsouInstitut de Pharmacologie et Biologie Structurale (IPBS), Université de Toulouse, CNRS, Université Toulouse III - Paul Sabatier (UT3), Toulouse, France.ORCID http://orcid.org/0000-0001-7951-9806
Sébastien BrittonInstitut de Pharmacologie et Biologie Structurale (IPBS), Université de Toulouse, CNRS, Université Toulouse III - Paul Sabatier (UT3), Toulouse, France.ORCID http://orcid.org/0000-0002-7008-5316
Tom L BlundellDepartment of Biochemistry, University of Cambridge; Sanger Building, Cambridge, UK.ORCID http://orcid.org/0000-0002-2708-8992
Thomas SchalchLeicester Institute for Structural and Chemical Biology, Department of Molecular and Cell Biology, University of Leicester, Leicester, UK.ORCID http://orcid.org/0000-0002-0758-3013
Amanda K ChaplinLeicester Institute for Structural and Chemical Biology, Department of Molecular and Cell Biology, University of Leicester, Leicester, UK. ac853@leicester.ac.uk.ORCID http://orcid.org/0000-0002-9606-8346

Funding

Agence Nationale de la Recherche (French National Research Agency) AAPG2023RCUK | Medical Research Council (MRC) MR/X00029X/1
6 · The paper itself

Abstract

DNA double-strand breaks (DSBs) are highly deleterious lesions that can trigger cell death or carcinogenesis if unrepaired or misrepaired. In mammals, most DSBs are repaired by non-homologous end joining (NHEJ), which begins when Ku70/80 binds DNA ends and recruits DNA-PKcs to form the DNA-PK holoenzyme. Although recent cryo-EM studies have resolved several NHEJ assemblies, how these factors access DSBs within nucleosomes remains unclear. Here, we present cryo-EM structures of human Ku70/80 and DNA-PK bound to nucleosomes. Ku70/80 binds the DNA end and bends it away from the nucleosome core, while the Ku70 C-terminal SAP domain makes an additional, specific DNA contact. Our DNA-PK-nucleosome structure further reveals the opening of the Ku80 vWA domain, and we show that non-hydrolysable ATP promotes synapsis by stabilising the Ku80-mediated DNA-PK dimer. These structures reveal a model for DSB recognition on nucleosomal DNA and provide insights relevant to targeting NHEJ in cancer therapy.

Indexed as

DNA-Activated Protein KinaseDNA End-Joining RepairKu AutoantigenNucleosomesCryoelectron MicroscopyDNADNA-Binding ProteinsDNA Breaks, Double-StrandedHumansModels, MolecularProtein BindingDNADNA-Activated Protein KinaseDNA-Binding ProteinsKu AutoantigenNucleosomesPRKDC protein, human

Identifiers

PMID41444611
PMCPMC12816671

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.