StructRMDB: A database of RNA modification sites that affect RNA secondary structure.

Ziyan Zhang, Xuan Wang, Jingxian Zhou, Jia Meng, Bowen Song, Yuxin Liang, Yuheng Cai, Jiongming Ma

Abstract read

In one paragraph

Article in Computational and structural biotechnology journal, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

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1citing papers in PubMed

–field-weighted citation impact

1 · What the graph read from it

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1 citing paper in PubMed.

ProNA3D: Distance-Based Analysis of Nucleic Acid-Containing Interfaces.Computational and structural biotechnology journal · 2026
Article

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5 · Who and what money

Authors and funding

8 authors.

Ziyan ZhangDepartment of Biosciences and Bioinformatics, Xi'an Jiaotong-Liverpool University, Suzhou, Jiangsu 215123, China.

Xuan WangDepartment of Biosciences and Bioinformatics, Xi'an Jiaotong-Liverpool University, Suzhou, Jiangsu 215123, China.

Jingxian ZhouSino-French Hoffmann Institute, School of Basic Medical Sciences, Guangzhou Medical University, Guangzhou, Guangdong 511436, China.

Jia MengDepartment of Biosciences and Bioinformatics, Xi'an Jiaotong-Liverpool University, Suzhou, Jiangsu 215123, China.

Bowen SongDepartment of Public Health, School of Medicine, Nanjing University of Chinese Medicine, Nanjing 210023, China.

Yuxin LiangDepartment of Biosciences and Bioinformatics, Xi'an Jiaotong-Liverpool University, Suzhou, Jiangsu 215123, China.

Yuheng CaiDepartment of Biosciences and Bioinformatics, Xi'an Jiaotong-Liverpool University, Suzhou, Jiangsu 215123, China.

Jiongming MaDepartment of Biosciences and Bioinformatics, Xi'an Jiaotong-Liverpool University, Suzhou, Jiangsu 215123, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Post-transcriptional RNA modifications, prevalent in multiple RNA species such as mRNA, rRNA, and tRNA, play a significant role in biological processes by altering RNA structures. With recent advancements in prediction algorithms, it is possible to predict RNA secondary structure for sequences containing modified bases. In this study, we introduce StructRMDB, the first database designed to characterize the impact of chemical modifications on RNA secondary structure. StructRMDB comprises more than 880,000 RNA modification sites and their structural impacts, including

Indexed as

Adenosine-to-inosine editingN6-methyladenosinePseudouridineRNA modificationRNA secondary structure

Identifiers

PMID41439023

DOI10.1016/j.csbj.2025.11.058

PMCPMC12720313

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