Evidence map›Paper›PMID 41436916›Full record

ArticleBMC plant biology2025

Rhizospheric and endophytic bacterial community response to continuous Atractylodes macrocephala cultivation.

Jingyi Xu, Kaohua Liu, Linxin Ye, Qinger Huang, Jiexi Wang, Luping Qin, Bo Zhu

Abstract read
In one paragraph

Article in BMC plant biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Jingyi Xu *School of Pharmaceutical Sciences, Zhejiang Chinese Medical University, Hangzhou, 311402, China.
Kaohua Liu *School of Pharmaceutical Sciences, Zhejiang Chinese Medical University, Hangzhou, 311402, China.
Linxin YeSchool of Pharmaceutical Sciences, Zhejiang Chinese Medical University, Hangzhou, 311402, China.
Qinger HuangSchool of Pharmaceutical Sciences, Zhejiang Chinese Medical University, Hangzhou, 311402, China.
Jiexi WangSchool of Pharmaceutical Sciences, Zhejiang Chinese Medical University, Hangzhou, 311402, China.
Luping QinSchool of Pharmaceutical Sciences, Zhejiang Chinese Medical University, Hangzhou, 311402, China. lpqin@zcmu.edu.cn.
Bo ZhuSchool of Pharmaceutical Sciences, Zhejiang Chinese Medical University, Hangzhou, 311402, China. zhubo@zcmu.edu.cn.

Funding

National Natural Science Foundation of China 82474034Science and Technology Research Project of Songyang Institute of Zhejiang Chinese Medical University SY-Z-2024501Zhejiang Provincial Natural Science Foundation of China LZ25H280003
6 · The paper itself

Abstract

Rhizospheric and endophytic bacteria play key roles in plant health and soil fertility. Atractylodes macrocephala, a traditional East Asia medicinal herb used to treat gastrointestinal disorders, cancer, and other ailments, experiences reduced growth and increased susceptibility to pathogen under continuous cultivation. We investigated the temporal dynamics of bacterial communities associated with A. macrocephala under continuous cultivation at a grassland site in Lin’an, Zhejiang Province, southeast China (119°25’E, 30°14’N). Using Illumina MiSeq sequencing, we analyzed temporal dynamics of bacterial communities associated with A. macrocephala under continuous cultivation. Continuous cultivation led to a significant shift in the structural and diversity patterns of both rhizospheric and endophytic bacterial communities, particularly in diseased roots. Beneficial genera such as Bacillus and Novosphingobium declined, while pathogenic taxa including Ralstonia and Pseudomonas increased, contributing to disease incidence. However, a two-year fallow period after cultivation helped restore microbial balance, suggesting that fallowing can mitigate continuous cultivation effects. Canonical correspondence analysis revealed that soil pH, hydrolyzable nitrogen, and mercury levels were key factors shaping bacterial community composition. Continuous A. macrocephala cultivation caused root-rot, disrupted endophytic and rhizospheric bacterial communities, and degraded soil fertility. A two-year fallow largely restored microbial communities and soil conditions to near-unplanted levels. Beneficial genera (Bacillus, Novosphingobium) declined under continuous cropping, while disease-associated taxa (Ralstonia, Pseudomonas, mainly P. aeruginosa) increased and may serve as indicators of soil health decline. These results clarify microbes’ roles in plant health and suggest mitigation strategies for continuous A. macrocephala cultivation.

Indexed as

AtractylodesBacteriaEndophytesRhizosphereSoil MicrobiologyPlant RootsAtractylodes macrocephalaContinuous cultivationEndophytic bacteriaRhizosphere bacteria

Identifiers

PMID41436916
PMCPMC12729025

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.