Evidence map›Paper›PMID 41431405›Full record

ArticleMicrobiologyOpen2025

Phylogenetic Footprints of Coagulase-Negative Staphylococci and Mammaliicoccus Isolated From Raw Caprine Milk.

Ahmed B Omer, Kamal H Eltom, Adam Bashir Tawor, Osman Erganiş

Abstract read
In one paragraph

Article in MicrobiologyOpen, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Ahmed B OmerDepartment of Microbiology, Al-Rass Food Safety Laboratory, Alqassim, Saudi Arabia.ORCID 0009-0005-3802-3392
Kamal H EltomDepartment of Animal Health and Safety of Animal Products, Institute for Studies and Promotion of Animal Exports, University of Khartoum, Shambat, Khartoum North, Sudan.ORCID 0000-0002-3707-5087
Adam Bashir TaworDepartment of Microbiology, Faculty of Veterinary Medicine, University of Selçuk, Konya, Türkiye.ORCID 0000-0001-6865-1801
Osman ErganişDepartment of Microbiology, Faculty of Veterinary Medicine, University of Selçuk, Konya, Türkiye.ORCID 0000-0002-9340-9360

Funding

The authors received no specific funding for this work.
6 · The paper itself

Abstract

Coagulase-negative staphylococci (CNS) and Mammaliicoccus species recently reclassified from the Staphylococcus sciuri group, are increasingly recognized as opportunistic pathogens in dairy animals and humans. This study investigated phylogenetic diversity and antimicrobial resistance in raw caprine milk from Sudan by integrating conventional bacteriological methods, molecular sequencing, and antimicrobial susceptibility testing. Raw goat milk samples were cultured, and presumptive CNS isolates were identified using phenotypic tests (novobiocin, oxidase, urease, and carbohydrate fermentation) following the standard Staphylococcus identification flow chart. PCR amplification of the elongation factor Tu (tuf) gene and the methicillin-resistance gene (mecA) enabled molecular confirmation and assessment of antimicrobial resistance. Sequenced tuf amplicons (~370 bp) were analyzed by BLAST and aligned in MEGA 12 for maximum-likelihood phylogenetic reconstruction. Staphylococcus simulans and Mammaliicoccus lentus were isolated in this study; antimicrobial susceptibility testing revealed that S. simulans, but not M. lentus, was methicillin-resistant and carried the mecA gene. Partial tuf gene sequencing confirmed 99.6%-99.7% identity with reference strains of the respective species. Phylogenetic analysis revealed that the isolated S. simulans formed a distinct branch within the global clusters. Meanwhile, M. lentus was found to be closely related to the global strains, showing only minor divergence. This study reports the presence of S. simulans and M. lentus in caprine milk from Sudan using both phenotypic and genotypic identification methods. This underscores the importance of integrating traditional laboratory methods with molecular techniques for precise species identification. The identification of methicillin-resistant S. simulans highlights the need for ongoing monitoring of CNS in raw milk.

Indexed as

MilkPhylogenyStaphylococcusAnimalsAnti-Bacterial AgentsBacterial ProteinsCoagulaseDNA, BacterialGoatsMethicillin ResistanceMicrobial Sensitivity TestsPeptide Elongation Factor TuSequence Analysis, DNASudanAnti-Bacterial AgentsBacterial ProteinsCoagulaseDNA, BacterialPeptide Elongation Factor Tucoagulase‐negativemicrobial genomicsOne Healthphylogenetic analysisStaphylococcustuf gene

Identifiers

PMID41431405
PMCPMC12723320

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.