Evidence map›Paper›PMID 41430471›Full record

ArticleNature neuroscience2026

Extracellular matrix proteolysis maintains synapse plasticity during brain development.

Haruna Nakajo, Ran Cao, Supriya A Mula, Justin McKetney, Nicholas J Silva, Kathy H Li, Robert J Chalkley, Lisa K Randolph, Muskaan Shah, Indigo V L Rose and 4 more

Abstract read
In one paragraph

Article in Nature neuroscience, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
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  6. Article
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  8. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors.

Haruna NakajoDepartment of Psychiatry and Behavioral Sciences/Weill Institute for Neurosciences, University of California, San Francisco, San Francisco, CA, USA.
Ran CaoDepartment of Psychiatry and Behavioral Sciences/Weill Institute for Neurosciences, University of California, San Francisco, San Francisco, CA, USA.
Supriya A MulaDepartment of Psychiatry and Behavioral Sciences/Weill Institute for Neurosciences, University of California, San Francisco, San Francisco, CA, USA.
Justin McKetneyJ. David Gladstone Institutes, San Francisco, CA, USA.ORCID http://orcid.org/0000-0002-2405-8288
Nicholas J SilvaDepartment of Psychiatry and Behavioral Sciences/Weill Institute for Neurosciences, University of California, San Francisco, San Francisco, CA, USA.
Kathy H LiDepartment of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA, USA.
Robert J ChalkleyDepartment of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA, USA.
Lisa K RandolphDepartment of Psychiatry and Behavioral Sciences/Weill Institute for Neurosciences, University of California, San Francisco, San Francisco, CA, USA.
Muskaan ShahDepartment of Psychiatry and Behavioral Sciences/Weill Institute for Neurosciences, University of California, San Francisco, San Francisco, CA, USA.
Indigo V L RoseInstitute for Neurodegenerative Diseases, Weill Institute for Neurosciences, University of California, San Francisco, San Francisco, CA, USA.ORCID http://orcid.org/0000-0003-0491-1269
Martin KampmannInstitute for Neurodegenerative Diseases, Weill Institute for Neurosciences, University of California, San Francisco, San Francisco, CA, USA.ORCID http://orcid.org/0000-0002-3819-7019
Danielle L SwaneyJ. David Gladstone Institutes, San Francisco, CA, USA.ORCID http://orcid.org/0000-0001-6119-6084
Christoph KirstNeuroscience Graduate Program, University of California, San Francisco, San Francisco, CA, USA.ORCID http://orcid.org/0000-0003-4867-5288
Anna V MolofskyDepartment of Psychiatry and Behavioral Sciences/Weill Institute for Neurosciences, University of California, San Francisco, San Francisco, CA, USA. anna.molofsky@ucsf.edu.ORCID http://orcid.org/0000-0002-4709-2411

Funding

UCSF IRACDA Scholars ProgramK12GM081266 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Raymond M. Esquerra, HOLLY A. INGRAHAM · 2007 to 2026
$19.4M
Uncovering the Genetic Mechanisms of the Chromosome 17q21.31 Tau Haplotype on Neurodegeneration Risk in FTD and PSPU54NS123746 · NINDS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI CHANG, TIMOTHY S · 2021 to 2025
$9.4M
Microglial remodeling of the extracellular matrix in memory circuitsR01MH125000 · NIMH · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MOLOFSKY, ANNA V · 2021 to 2025
$3.3M
Identification of trans-regulatory elements controlling MAPT transcriptionR01AG085357 · NIA · HUDSON-ALPHA INSTITUTE FOR BIOTECHNOLOGY · PI Jesse N Cochran, Richard M Myers · 2024 to 2026
$2.2M
Defining the interactions between microglia and synapses in brain development and diseaseR00NS130018 · NINDS · SAN FRANCISCO STATE UNIVERSITY · PI Nicholas Jeremy Silva · 2025 to 2026
$491k
Brain Research Foundation (BRF) DP2MH116507NIA NIH HHS R01 AG085357NIGMS NIH HHS K12 GM081266NIMH NIH HHS R01 MH125000NINDS NIH HHS R00 NS130018U.S. Department of Health & Human Services | NIH | National Institute of Neurological Disorders and Stroke (NINDS) U54NS123746U.S. Department of Health & Human Services | NIH | National Institute on Aging (U.S. National Institute on Aging) R01AG085357
6 · The paper itself

Abstract

The extracellular matrix (ECM) regulates synaptic plasticity via mechanisms that are still being defined and have been studied predominantly in adulthood. Here, using live imaging of excitatory synapses in zebrafish hindbrain, we observed a bimodal distribution of short-lived (dynamic) and longer-lived (stable) synapses. Disruption of ECM via digestion or brevican deletion destabilized dynamic synapses and led to decreased synapse density. Conversely, loss of matrix metalloproteinase 14 (MMP14) led to accumulation of brevican and increased the lifetime of the dynamic synapse pool without affecting the stable synapse pool, resulting in increased overall synapse density. Microglial MMP14 was essential to these effects in both fish and human induced pluripotent stem cell-derived cultures. Both MMP14 and brevican were required for experience-dependent synapse plasticity in a motor learning assay. These data, complemented by mathematical modeling, define an essential role of ECM remodeling in maintaining a dynamic subset of synapses during brain development.

Indexed as

BrainExtracellular MatrixNeuronal PlasticitySynapsesAnimalsAnimals, Genetically ModifiedBrevicanHumansInduced Pluripotent Stem CellsMatrix Metalloproteinase 14ProteolysisZebrafishZebrafish ProteinsBrevicanMatrix Metalloproteinase 14Zebrafish Proteins

Identifiers

PMID41430471
PMCPMC12971489

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.