Evidence map›Paper›PMID 41430078›Full record

ArticleNPJ Parkinson's disease2025

Parkinson's disease-associated alterations in DNA methylation and hydroxymethylation in human brain.

Juliana I Choza, Mahek Virani, Nathan C Kuhn, Marie Adams, Joseph Kochmanski, Alison I Bernstein

Abstract read
In one paragraph

Article in NPJ Parkinson's disease, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Neurobiology of exercise in Parkinson's disease.Journal of Parkinson's disease · 2026
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Juliana I Choza *Department of Pharmacology and Toxicology, Ernest Mario School of Pharmacy, Rutgers University, Piscataway, NJ, USA.ORCID http://orcid.org/0000-0001-7038-9750
Mahek Virani *Department of Pharmacology and Toxicology, Ernest Mario School of Pharmacy, Rutgers University, Piscataway, NJ, USA.ORCID http://orcid.org/0009-0006-6094-4478
Nathan C KuhnDepartment of Translational Neuroscience, College of Human Medicine, Michigan State University, Grand Rapids, MI, USA.
Marie AdamsGenomics Core, Van Andel Research Institute, Grand Rapids, MI, USA.ORCID http://orcid.org/0000-0001-7909-2339
Joseph KochmanskiDepartment of Translational Neuroscience, College of Human Medicine, Michigan State University, Grand Rapids, MI, USA.ORCID http://orcid.org/0000-0002-8472-3032
Alison I BernsteinDepartment of Pharmacology and Toxicology, Ernest Mario School of Pharmacy, Rutgers University, Piscataway, NJ, USA. bernstein.alison@rutgers.edu.ORCID http://orcid.org/0000-0002-5589-4318

Funding

Research Education ComponentP30AG019610 · NIA · SUN HEALTH RESEARCH INSTITUTE · PI REIMAN, ERIC MICHAEL · 2001 to 2020
$32.5M
National Brain and Tissue Resource for Parkinson's Disease and Related DisordersU24NS072026 · NINDS · BANNER SUN HEALTH RESEARCH INSTITUTE · PI BEACH, THOMAS G · 2011 to 2015
$7.8M
Diversity Supplement to Dieldrin-induced differential gene methylation and parkinsonian toxicity (R01ES031237)R01ES031237 · NIEHS · RUTGERS BIOMEDICAL AND HEALTH SCIENCES · PI BERNSTEIN, ALISON · 2021 to 2025
$2.3M
Epigenetic effects of adult and developmental exposure to Parkinsonian toxicantsR00ES024570 · NIEHS · MICHIGAN STATE UNIVERSITY · PI BERNSTEIN, ALISON · 2017 to 2019
$726k
NIA NIH HHS P30 AG019610NIEHS NIH HHS R00 ES024570NIEHS NIH HHS R01 ES031237NINDS NIH HHS U24 NS072026
6 · The paper itself

Abstract

Epigenetic mechanisms mediate interactions between aging, genetics, and environmental factors in sporadic Parkinson's disease (PD). While multiple studies have explored DNA modifications in PD, few focus on 5-hydroxymethylcytosine (5hmc), which is important in the central nervous system and sensitive to environmental exposures. Existing studies have not differentiated between 5-methylcytosine (5mc) and 5hmc or have analyzed them separately. In this study, we modeled 5mc and 5hmc data simultaneously. We identified 108 cytosines with significant PD-associated shifts between these marks in an enriched neuronal population from PD postmortem parietal cortex, within 83 genes and 34 enhancers associated with 67 genes. These data potentially link epigenetic regulation of genes related to LRRK2 and endolysosomal sorting (RAB32 and AGAP1), and genes involved in neuroinflammation, the inflammasome, and neurodevelopment with early changes in PD and suggest that there are significant shifts between 5mC and 5hmC associated with PD in genes not captured by standard methods.

Identifiers

PMID41430078
PMCPMC12749594

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.