Evidence map›Paper›PMID 41427682›Full record

ArticleProtein science : a publication of the Protein Society2026

Design and characterization of calprotectin tetramerization variants for probing the role of oligomerization in receptor activation.

Velia Garcia, Areetha D'Souza, Natalia Kozlyuk, Yasiru R Perera, Steven M Damo, Walter J Chazin

Abstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Velia GarciaDepartment of Chemistry, Vanderbilt University, Nashville, Tennessee, USA.
Areetha D'SouzaCenter for Structural Biology, Vanderbilt University, Nashville, Tennessee, USA.
Natalia KozlyukCenter for Structural Biology, Vanderbilt University, Nashville, Tennessee, USA.
Yasiru R PereraCenter for Structural Biology, Vanderbilt University, Nashville, Tennessee, USA.
Steven M DamoCenter for Structural Biology, Vanderbilt University, Nashville, Tennessee, USA.
Walter J ChazinDepartment of Chemistry, Vanderbilt University, Nashville, Tennessee, USA.ORCID https://orcid.org/0000-0002-2180-0790

Funding

User Training and OutreachP30GM124165 · NIGMS · CORNELL UNIVERSITY · PI Nozomi Ando, J Christopher Fromme · 2018 to 2026
$34.2M
Host-mediated zinc sequestration during Acinetobacter baumannii infectionR01AI101171 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI WALTER J. CHAZIN, DAVID P. GIEDROC · 2013 to 2026
$8.2M
Neisseria gonorrhoeae metal transporters that subvert nutritional immunityR01AI127793 · NIAID · VIRGINIA COMMONWEALTH UNIVERSITY · PI CYNTHIA N CORNELISSEN, Alison K Criss · 2017 to 2026
$6.8M
Structural Biology of Multi-Domain Proteins and Multi-Protein Machinery in DNA Replication and RepairR35GM118089 · NIGMS · VANDERBILT UNIVERSITY · PI WALTER J. CHAZIN · 2016 to 2026
$4.9M
Pixel Array Detector for Macromolecular CrystallographyS10OD021527 · OD · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2016 to 2016
$2.0M
Console upgrades for biological NMR spectrometersS10RR025677 · NCRR · VANDERBILT UNIVERSITY · PI SANDERS, CHARLES R · 2009 to 2009
$460k
National Science Foundation 0922862NCRR NIH HHS S10 RR025677NIAID NIH HHS R01 AI101171NIAID NIH HHS R01 AI127793NIGMS NIH HHS P30 GM124165NIGMS NIH HHS R35 GM118089NIH HHS AI101171NIH HHS AI127793NIH HHS R35 GM118089-04S1NIH HHS S10 OD021527NIH HHS S10 RR025677
6 · The paper itself

Abstract

Calprotectin is a heterodimer of the S100A8 and S100A9 EF-hand calcium binding proteins, which activates cell surface receptors that signal through the NF-κB inflammatory signaling pathway. Like all S100 proteins, calcium-induced conformational changes in calprotectin are required for binding to partner proteins. In the case of calprotectin, the addition of calcium correlates with the formation of a dimer of heterodimers (heterotetramer). Ligand-induced receptor oligomerization has been proposed as a mechanism of receptor activation. Conversely, it has also been suggested that calprotectin tetramerization can inhibit binding to receptors and serve as an autoinhibitory mechanism. In order to investigate the biological relevance of calprotectin tetramerization and facilitate in-depth biophysical and structural analysis, we have prepared three tetramerization-deficient variants: two single-site S100A8 mutations of hydrophobic isoleucine residues mediating the tetramer interface to lysine (I60K, I73K) and the corresponding double-site mutant (I60K/I70K). Dynamic light scattering, small-angle x-ray scattering, and nuclear magnetic resonance spectroscopy showed that all three tetramer-deficient variants remain as dimers in solution even in the presence of 40-fold excess calcium and undergo calcium-induced conformational changes. The crystal structure of I73K was determined to atomic-level resolution and confirms that the mutations cause only subtle, localized effects on the structure. Together, the results indicate that these tetramerization-deficient mutants will be useful reagents for discerning the functional role of calprotectin oligomerization in the activation of inflammatory receptors.

Indexed as

Calgranulin ALeukocyte L1 Antigen ComplexProtein MultimerizationCalciumCrystallography, X-RayHumansModels, MolecularCalciumCalgranulin ALeukocyte L1 Antigen ComplexS100A8 protein, humancalcium‐bindingcalprotectinNMRoligomerizationS100 proteinssmall‐angle x‐ray scattering (SAXS)x‐ray crystallography

Identifiers

PMID41427682
PMCPMC12720418

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.