Evidence map›Paper›PMID 41427329›Full record

ArticlebioRxiv : the preprint server for biology2025

Low-order assemblies drive oncogenic RTK fusion signaling without condensation.

David Gonzalez-Martinez, Thomas R Mumford, Delaney Wilde, Sofia Wissert, Yuzhi Carol Gao, Emily Brackhahn, Richard Kriwacki, Elizabeth Rhoades, Lukasz J Bugaj

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

David Gonzalez-MartinezDepartment of Bioengineering, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Thomas R MumfordDepartment of Bioengineering, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Delaney WildeDepartment of Bioengineering, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Sofia WissertDepartment of Bioengineering, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Yuzhi Carol GaoDepartment of Bioengineering, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Emily BrackhahnDepartment of Chemistry, University of Pennsylvania, Philadelphia, PA 19104, USA.
Richard KriwackiDepartment of Structural Biology, St. Jude Children's Research Hospital, TN, 38105, USA.
Elizabeth RhoadesDepartment of Chemistry, University of Pennsylvania, Philadelphia, PA 19104, USA.
Lukasz J BugajDepartment of Bioengineering, University of Pennsylvania, Philadelphia, PA, 19104, USA.

Funding

Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI Shondra Michelle Miller · 1985 to 2026
$166.9M
Harnessing protein clustering to understand, identify, and manipulate cellular systemsR35GM138211 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI Lukasz Bugaj · 2020 to 2026
$3.3M
Role of Phase separation by fusion oncoproteins in oncogenesisR01CA246125 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI DENIZ, ASHOK A, KRIWACKI, RICHARD W · 2020 to 2024
$3.2M
Structural basis and physiological consequences of alpha-Synuclein binding to neurexin 1betaR01NS120625 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI RHOADES, ELIZABETH · 2021 to 2025
$2.9M
Acquisition of a Cell Sorter for Systems Biology and Cellular EngineeringS10OD026986 · OD · UNIVERSITY OF PENNSYLVANIA · PI BUGAJ, LUKASZ · 2020 to 2020
$439k
NCI NIH HHS P30 CA021765NCI NIH HHS R01 CA246125NIGMS NIH HHS R35 GM138211NIH HHS S10 OD026986NINDS NIH HHS R01 NS120625
6 · The paper itself

Abstract

Receptor tyrosine kinase (RTK) fusions are a large class of oncoproteins found in ~5% of cancers. Key questions remain, however, about how RTK fusions transmit oncogenic signals, including how these largely cytoplasmic proteins activate downstream pathways that originate at the plasma membrane. Fusions are multimeric and can form mesoscale condensates in cancer cells, and condensation has been implicated as an essential mechanism to enable signal transmission from the cytoplasm. However, whether condensates play a causal role, or whether smaller 'diffuse' assemblies are sufficient to transduce signals, has been challenging to establish. Here we apply advanced microscopy, single-cell analysis, and synthetic fusions to determine the principles by which multimerization and condensation drive signaling from cytoplasmic RTK fusions. For EML4-ALK, a prominent fusion that forms condensates, we found poor correlation between condensation and signaling. By contrast, EML4-ALK activity was abundant in the diffuse phase, and the kinetics of diffuse-phase activity aligned more closely with downstream Erk signaling than did kinetics of signaling within condensates. Synthetic RTK fusions showed that cytoplasmic ALK or RET fusion dimers-and even constitutively active monomers-were sufficient to induce strong Ras-Erk signaling despite the absence of condensates, and diffuse fusions were sufficient to transform cells in vitro and in subcutaneous tumor models. A panel of various other cancer-driving RTK fusions showed that low-order multimerization was universal across fusions, whereas mesoscale condensation was rare and did not correlate with signaling. Our results suggest that low-order fusion multimerization is sufficient to drive its phosphorylation, which is necessary and sufficient to trigger downstream oncogenic signaling.

Identifiers

PMID41427329
PMCPMC12715544

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.