Evidence map›Paper›PMID 41427286›Full record

ArticlebioRxiv : the preprint server for biology2025

Visual Semantic Encoding and Identification of Naturalistic Movies via High-Density Diffuse Optical Tomography.

Wiete Fehner, Morgan Fogarty, Jerry Tang, Dana Wilhelm, Aahana Bajracharya, Zachary E Markow, Amelia Hines, Jason W Trobaugh, Alexander G Huth, Joseph P Culver

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Wiete FehnerImaging Science, Washington University in St. Louis, St. Louis, MO, USA.ORCID 0009-0007-8237-8515
Morgan FogartyMallinckrodt Institute of Radiology, Washington University in St. Louis School of Medicine, St. Louis, MO, USA.ORCID 0000-0003-1334-1923
Jerry TangDepartment of Speech, Language, and Hearing Sciences, The University of Texas at Austin, Austin, TX, USA.
Dana WilhelmMallinckrodt Institute of Radiology, Washington University in St. Louis School of Medicine, St. Louis, MO, USA.
Aahana BajracharyaImaging Science, Washington University in St. Louis, St. Louis, MO, USA.ORCID 0000-0002-7361-6020
Zachary E MarkowMallinckrodt Institute of Radiology, Washington University in St. Louis School of Medicine, St. Louis, MO, USA.ORCID 0000-0002-2587-6821
Amelia HinesMallinckrodt Institute of Radiology, Washington University in St. Louis School of Medicine, St. Louis, MO, USA.
Jason W TrobaughMallinckrodt Institute of Radiology, Washington University in St. Louis School of Medicine, St. Louis, MO, USA.ORCID 0009-0008-5183-3359
Alexander G HuthDepartment of Neuroscience, University of California, Berkeley, Berkeley, California, USA.
Joseph P CulverImaging Science, Washington University in St. Louis, St. Louis, MO, USA.ORCID 0000-0001-9738-3084

Funding

High-Sensitivity DOT for Mapping Human Brain FunctionR01NS090874 · NINDS · WASHINGTON UNIVERSITY · PI CULVER, JOSEPH P · 2014 to 2025
$5.5M
21ST CENTURY IMAGING SCIENCES: GRADUATE STUDENT TRAININGT32EB014855 · NIBIB · WASHINGTON UNIVERSITY · PI JOSEPH P CULVER, JOSEPH A O'SULLIVAN · 2012 to 2026
$3.1M
Wireless High-Density Diffuse Optical Tomography for Decoding Brain ActivityU01EB027005 · NIBIB · WASHINGTON UNIVERSITY · PI CULVER, JOSEPH P · 2018 to 2021
$2.7M
Assessing semantic encoding and decoding models in stroke-induced aphasiaF32DC022178 · NIDCD · UNIVERSITY OF TEXAS AT AUSTIN · PI Jerry Tang · 2024 to 2026
$225k
Optical Tomography and Decoding for Communication via Brain-Computer InterfaceF31NS110261 · NINDS · WASHINGTON UNIVERSITY · PI MARKOW, ZACHARY E · 2019 to 2021
$75k
NIBIB NIH HHS T32 EB014855NIBIB NIH HHS U01 EB027005NIDCD NIH HHS F32 DC022178NINDS NIH HHS F31 NS110261NINDS NIH HHS R01 NS090874
6 · The paper itself

Abstract

Understanding how the brain represents meaning in real-world contexts is essential for both fundamental neuroscience and clinical applications. Brain encoding and decoding models from naturalistic stimuli provide a powerful window into semantic representations. Yet, existing approaches rely on a constrained scanning environment, or on conventional fNIRS, which has been limited to sparse sampling and/or block-design paradigms. Here, we tested whether high-density diffuse optical tomography (HD-DOT), an advanced high-density tomographic optical imaging method, can support semantic encoding and decoding using naturalistic movies. We collected 3.5 hours of naturalistic movie viewing data from six participants using stimuli labeled with 1,708 categories. Encoding models robustly predicted voxel-level responses, yielding single semantic category maps consistent with prior fMRI studies. In complementary decoding analyses, we showed that DOT responses captured sufficient semantic content to identify which clips participants viewed. To assess organization across individuals, we identified a shared low-dimensional semantic space that captures common semantic dimensions. Finally, clustering analyses revealed interpretable higher-order semantic dimensions like social and animate agents, objects vs natural organisms, and textural scenes, consistently mapped across the cortex. These findings demonstrate that DOT can recover distributed, high-dimensional semantic representations from naturalistic movies, bridging fMRI-level semantic mapping with the accessibility of optical imaging.

Indexed as

Brain mappingFunctional near-infrared spectroscopy (fNIRS)High-density diffuse optical tomography (HD-DOT)Naturalistic neuroimagingOptical neuroimagingSemantic decodingSemantic encodingTranslational neuroscienceVisual semantics

Identifiers

PMID41427286
PMCPMC12713126

What OpenQuestion holds

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LicenceCC BY-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.