Evidence map›Paper›PMID 41425608›Full record

ArticlePhysiology and molecular biology of plants : an international journal of functional plant biology2025

Transcriptomic, biochemical, and microbiome assessments into drought and salinity tolerance in durum wheat mediated by plant growth-promoting bacteria.

Mohammad Yaghoubi Khanghahi, Hamada AbdElgawad, Maddalena Curci, Romain Garrigues, Shereen Magdy Korany, Emad A Alsherif, Erik Verbruggen, Matteo Spagnuolo, Rosangela Addesso, Adriano Sofo and 2 more

Abstract read
In one paragraph

Article in Physiology and molecular biology of plants : an international journal of functional plant biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Mohammad Yaghoubi KhanghahiDepartment of Agricultural, Forestry, Food and Environmental Sciences (DAFE), Università degli Studi della Basilicata, Viale dell'Ateneo Lucano 10, 85100 Potenza, Italy.ORCID 0000-0001-7594-4485
Hamada AbdElgawadDepartment of Biology, Integrated Molecular Plant Physiology Research, University of Antwerp, 2020 Antwerp, Belgium.
Maddalena CurciDepartment of Soil, Plant and Food Sciences, University of Bari Aldo Moro, Via Amendola 165/A, 70126 Bari, Italy.
Romain GarriguesDepartment of Biology, Integrated Molecular Plant Physiology Research, University of Antwerp, 2020 Antwerp, Belgium.
Shereen Magdy KoranyDepartment of Biology, College of Science, Princess Nourah bint Abdulrahman University, P.O. Box 84428, Riyadh, 11671 Saudi Arabia.
Emad A AlsherifDepartment of Botany and Microbiology, Faculty of Science, Beni-Suef University, Beni-Suef, 62511 Egypt.
Erik VerbruggenPlants and Ecosystems Research Group, Department of Biology, University of Antwerp, Universiteitsplein 1C, 2610 Wilrijk, Belgium.
Matteo SpagnuoloDepartment of Soil, Plant and Food Sciences, University of Bari Aldo Moro, Via Amendola 165/A, 70126 Bari, Italy.
Rosangela AddessoDepartment of Agricultural, Forestry, Food and Environmental Sciences (DAFE), Università degli Studi della Basilicata, Viale dell'Ateneo Lucano 10, 85100 Potenza, Italy.
Adriano SofoDepartment of Agricultural, Forestry, Food and Environmental Sciences (DAFE), Università degli Studi della Basilicata, Viale dell'Ateneo Lucano 10, 85100 Potenza, Italy.
Gerrit T S BeemsterDepartment of Biology, Integrated Molecular Plant Physiology Research, University of Antwerp, 2020 Antwerp, Belgium.
Carmine CrecchioDepartment of Soil, Plant and Food Sciences, University of Bari Aldo Moro, Via Amendola 165/A, 70126 Bari, Italy.ORCID https://orcid.org/0000-0003-0751-236X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This study investigates the efficacy of plant growth-promoting bacteria (PGPB) in improving stress tolerance in plants by analyzing the molecular and biochemical bases in durum wheat grain. An experiment was conducted where soil and seeds were inoculated with PGPB, under drought and salinity stress. 16 S rRNA sequencing indicated no change in grain bacterial communities in response to biofertilizers and stress. However, a genome-wide analysis identified 153 up-regulated and 33 down-regulated plant genes in response to PGPB, predominantly enriched in stress-related biological processes. These genes specifically encode for proteins involved in metabolite interconversion enzyme, chaperone, protein modifying enzyme, and transporters, which are functionally related groups assisting protein folding in the cell under stress conditions. Moreover, pathway analysis confirmed related changes at the metabolite and enzyme activity levels. In this regard, PGPB-treated plants exhibited heightened activity of both enzymatic and non-enzymatic (e.g., thioredoxins, peroxiredoxins, etc.) antioxidants under stress, showcasing significant enhancements ranging from + 27% to + 283% and + 36% to + 266%, respectively. Further elucidation of biochemical pathways revealed alterations in the activation of non-antioxidant enzymes in PGPB-treated plants, exemplified by increased activities of glutamate synthase (40-44%) and decreased activities of protein-tyrosine-phosphatase (29-31%) under both stresses, as well as elevated activities of anthocyanidin reductase (91%) and lipoxygenases (18%) specifically under drought. Overall, the present research highlighted the potential of beneficial bacteria in improving plant stress tolerance, especially under drought, through shifting transcriptome expression of plant genes and employing multiple protective strategies which can complement each other. Supplementary Information: The online version contains supplementary material available at 10.1007/s12298-025-01686-z.

Indexed as

Durum wheat grainEndophytic bacterial communityPlant growth-promoting bacteriaStressTranscriptomics

Identifiers

PMID41425608
PMCPMC12715099

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.