Evidence map›Paper›PMID 41424471›Full record

ArticleIEEE transactions on radiation and plasma medical sciences2025

YRT-PET: An Open-Source GPU-accelerated Image Reconstruction Engine for Positron Emission Tomography.

Yassir Najmaoui, Yanis Chemli, Maxime Toussaint, Yoann Petibon, Baptiste Marty, Kathryn Fontaine, Jean-Dominique Gallezot, Gašper Razdevšek, Matic Orehar, Maeva Dhaynaut and 10 more

Abstract read
In one paragraph

Article in IEEE transactions on radiation and plasma medical sciences, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Attenuation Pre-Correction in Iterative PET Image Reconstruction: What is the Statistical Cost?IEEE transactions on radiation and plasma medical sciences · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Yassir NajmaouiYale Biomedical Imaging Institute and Department of Radiology and Biomedical Imaging, Yale University School of Medicine, New Haven, CT, USA and the Interdisciplinary Institute for Technological Innovation, Université de Sherbrooke, Sherbrooke, QC, Canada.
Yanis ChemliYale Biomedical Imaging Institute and Department of Radiology and Biomedical Imaging, Yale University School of Medicine, New Haven, CT, USA.
Maxime ToussaintGordon Center for Medical Imaging, and is now with the Sherbrooke Molecular Imaging Center of CRCHUS and Department of Medical Imaging and Radiation Sciences, Université de Sherbrooke, Sherbrooke, QC, Canada.
Yoann PetibonGordon Center for Medical Imaging, and is now with Takeda Pharmaceuticals, Cambridge MA, USA.
Baptiste MartyGordon Center for Medical Imaging, and is now with Exail Sonar Division, Paris, France.
Kathryn FontaineYale Biomedical Imaging Institute and Department of Radiology and Biomedical Imaging, Yale University School of Medicine, New Haven, CT, USA.
Jean-Dominique GallezotYale Biomedical Imaging Institute and Department of Radiology and Biomedical Imaging, Yale University School of Medicine, New Haven, CT, USA.
Gašper RazdevšekJožef Stefan Institute, Ljubljana, Slovenia.
Matic OreharFaculty of Mathematics and Physics, University of Ljubljana, Ljubljana, Slovenia.
Maeva DhaynautYale Biomedical Imaging Institute and Department of Radiology and Biomedical Imaging, Yale University School of Medicine, New Haven, CT, USA.
Nicolas GuehlYale Biomedical Imaging Institute and Department of Radiology and Biomedical Imaging, Yale University School of Medicine, New Haven, CT, USA.
Rok DolenecFaculty of Mathematics and Physics, University of Ljubljana, and the Jožef Stefan Institute, Ljubljana, Slovenia.
Rok PestotnikJožef Stefan Institute, Ljubljana, Slovenia.
Keith JohnsonGordon Center for Medical Imaging, Mass. General Research Institute, Boston MA, USA.
Jinsong OuyangYale Biomedical Imaging Institute and Department of Radiology and Biomedical Imaging, Yale University School of Medicine, New Haven, CT, USA.
Marc NormandinYale Biomedical Imaging Institute and Department of Radiology and Biomedical Imaging, Yale University School of Medicine, New Haven, CT, USA.
Marc-André TétraultGordon Center for Medical Imaging, Massachusetts General Hospital, Boston MA, and is now with the Interdisciplinary Institute for Technological Innovation, Université de Sherbrooke, Sherbrooke, QC, Canada.
Roger LecomteSherbrooke Molecular Imaging Center of CRCHUS and Department of Medical Imaging and Radiation Sciences, Université de Sherbrooke, Sherbrooke, QC, Canada.
Georges El FakhriYale Biomedical Imaging Institute and Department of Radiology and Biomedical Imaging, Yale University School of Medicine, New Haven, CT, USA.
Thibault MarinYale Biomedical Imaging Institute and Department of Radiology and Biomedical Imaging, Yale University School of Medicine, New Haven, CT, USA.

Funding

Unified Joint Statistical Reconstruction of PET & MRP41EB022544 · NIBIB · YALE UNIVERSITY · PI Kira Grogg · 2017 to 2026
$14.8M
Ultra High Resolution Brain PET Scanner for in-vivo Autoradiography ImagingU01EB027003 · NIBIB · YALE UNIVERSITY · PI EL FAKHRI, GEORGES, FONTAINE, RÉJEAN · 2018 to 2022
$4.6M
Methods for Quantitative Neuroimaging of Tau Burden inPre-symptomatic ADR01AG076153 · NIA · YALE UNIVERSITY · PI Georges El Fakhri, Marc David Normandin · 2022 to 2026
$3.0M
Next generation scalable time-of-flight PET - FastSightR01EB036642 · NIBIB · YALE UNIVERSITY · PI Georges El Fakhri · 2025 to 2026
$1.4M
Improved drug efficacy assessment using joint Bayesian estimation frameworkR01EB035093 · NIBIB · YALE UNIVERSITY · PI Thibault Marin · 2024 to 2026
$1.2M
NIA NIH HHS R01 AG076153NIBIB NIH HHS P41 EB022544NIBIB NIH HHS R01 EB035093NIBIB NIH HHS R01 EB036642NIBIB NIH HHS U01 EB027003
6 · The paper itself

Abstract

Image reconstruction for positron emission tomography (PET) requires an accurate model of the PET scanner geometry and degrading factors to produce high-quality and clinically meaningful images. It is typically implemented by scanner manufacturers, with proprietary software designed specifically for each scanner. This limits the ability to perform direct comparisons between scanners or to develop advanced image reconstruction algorithms. Open-source image reconstruction software can offer an alternative to manufacturer implementations, allowing more control and portability. Several existing software packages offer a wide range of features and interfaces, but there is still a need for an engine that simultaneously offers reusable code, fast implementation and convenient interfaces for interoperability and extensibility. In this work, we introduce YRT-PET (Yale Reconstruction Toolkit for Positron Emission Tomography), an open-source toolkit for PET image reconstruction that aims for flexibility, reproducibility, speed, and interoperability with existing research software. The toolkit is implemented in C++ with CUDA-enabled GPU acceleration, relies on a plugin system to facilitate the use with multiple scanners, and offers Python bindings to enable the development of advanced algorithms. It includes support for list-mode/histogram data formats, multiple PET projectors, incorporation of time-of-flight information, event-by-event rigid motion correction, point-spread function modeling. It can incorporate correction factors such as normalization, randoms and scatter, obtained from scanner-specific plugins or provided by the user. The toolkit also includes an experimental module for scatter estimation without time-of-flight. To evaluate the capabilities of the software, two different scanners in four different contexts were tested: dynamic imaging, motion correction, deep image prior, and reconstruction for a limited-angle scanner geometry with time-of-flight. Comparisons with existing tools demonstrated good agreement in image quality and the effectiveness of the correction methods. The proposed software toolkit offers high versatility and potential for research, including the development of novel reconstruction algorithms and new PET scanner systems.

Indexed as

C++graphics processing unit (GPU)image reconstructionpositron emission tomography (PET)Pythonsoftware

Identifiers

PMID41424471
PMCPMC12714321

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.