Evidence map›Paper›PMID 41422509›Full record

ArticleCell reports2026

A ribosome-bound pseudoknot in the HCV coding region stimulates viral growth by tuning viral translation.

Han Wan, Harim Jang, Ling Xu, Kyrillos S Abdallah, Wendy V Gilbert, Anna Marie Pyle

Abstract read
In one paragraph

Article in Cell reports, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Han WanDepartment of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06511, USA.
Harim JangDepartment of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06511, USA; Howard Hughes Medical Institute, Chevy Chase, MD 20815, USA.
Ling XuDepartment of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06511, USA; Howard Hughes Medical Institute, Chevy Chase, MD 20815, USA.
Kyrillos S AbdallahDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06510, USA.
Wendy V GilbertDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06510, USA.
Anna Marie PyleDepartment of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06511, USA; Department of Chemistry, Yale University, New Haven, CT 06511, USA; Howard Hughes Medical Institute, Chevy Chase, MD 20815, USA. Electronic address: anna.pyle@yale.edu.

Funding

High-throughput detection of transcriptomic and epitranscriptomic variation and kinetics using MarathonRTR01HG011868 · NHGRI · YALE UNIVERSITY · PI GRAVELEY, BRENTON R., PYLE, ANNA MARIE · 2021 to 2024
$3.9M
Translational Control by 5'-untranslated regionsR01GM132358 · NIGMS · YALE UNIVERSITY · PI GILBERT, WENDY VICTORIA · 2019 to 2022
$1.4M
Howard Hughes Medical InstituteNHGRI NIH HHS R01 HG011868NIGMS NIH HHS R01 GM132358
6 · The paper itself

Abstract

Recent studies have uncovered a number of functional RNA structures in RNA viruses, yet their regulatory roles remain poorly understood. Here, using an unbiased proteomic approach alongside targeted biochemical assays, we investigate a previously uncharacterized functional pseudoknot (pk1) within the hepatitis C virus coding region and show that it stably interacts with host ribosomes, inhibiting translation and potentially acting as a regulator between viral translation and RNA genome replication. Comparative structural analysis identifies pk1-like elements in related RNA viruses, suggesting a conserved regulatory mechanism. This study expands the known functions of pseudoknots in viral coding regions beyond frameshifting, highlights the critical role of RNA structure-mediated regulation within viral open reading frames, and provides insight into the design of viral therapeutics and vaccines.

Indexed as

HepacivirusOpen Reading FramesProtein BiosynthesisRibosomesRNA, ViralHumansNucleic Acid ConformationVirus ReplicationRNA, Viralanti-sense RNACP: microbiologyCP: molecular biologygenetic codelocked nucleic acidsriboregulationRNA-binding proteinsRNA structureRNA virustranslation inhibitiontranslation initiation

Identifiers

PMID41422509
PMCPMC12951691

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.