Evidence map›Paper›PMID 41422315›Full record

ArticleScientific reports2025

Autophagy related biomarkers in ulcerative colitis revealed by bioinformatics analysis and immune correlation.

Xinyi Xue Chen, Shichen Min, Zhaofeng Shen, Mengyuan Zhang, Lejuan Huang, Mengran Su, Hong Shen, Lei Zhu

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Xinyi Xue ChenAffiliated Hospital of Nanjing University of Chinese Medicine, Jiangsu Province Hospital of Chinese Medicine, Nanjing, Jiangsu Province, China.
Shichen MinAffiliated Hospital of Nanjing University of Chinese Medicine, Jiangsu Province Hospital of Chinese Medicine, Nanjing, Jiangsu Province, China.
Zhaofeng ShenAffiliated Hospital of Nanjing University of Chinese Medicine, Jiangsu Province Hospital of Chinese Medicine, Nanjing, Jiangsu Province, China.
Mengyuan ZhangAffiliated Hospital of Nanjing University of Chinese Medicine, Jiangsu Province Hospital of Chinese Medicine, Nanjing, Jiangsu Province, China.
Lejuan HuangAffiliated Hospital of Nanjing University of Chinese Medicine, Jiangsu Province Hospital of Chinese Medicine, Nanjing, Jiangsu Province, China.
Mengran SuAffiliated Hospital of Nanjing University of Chinese Medicine, Jiangsu Province Hospital of Chinese Medicine, Nanjing, Jiangsu Province, China.
Hong ShenAffiliated Hospital of Nanjing University of Chinese Medicine, Jiangsu Province Hospital of Chinese Medicine, Nanjing, Jiangsu Province, China. shenhong999@njucm.edu.cn.
Lei ZhuAffiliated Hospital of Nanjing University of Chinese Medicine, Jiangsu Province Hospital of Chinese Medicine, Nanjing, Jiangsu Province, China. zhulei5100@njucm.edu.cn.

Funding

Jiangsu Leading Talents in Traditional Chinese Medicine SLJ0306Jiangsu Provincial Administration of Traditional Chinese Medicine 2022WTZX04
6 · The paper itself

Abstract

Ulcerative colitis (UC) is a chronic inflammatory bowel disease of unknown etiology characterized by abnormal mucosal immune responses and persistent intestinal inflammation. UC significantly reduces quality of life and imposes a substantial economic burden. Early diagnosis and personalized treatment are crucial for improving outcomes; however, significant challenges remain. This study aimed to identify novel molecular targets for UC treatment. Gene expression data related to UC were obtained from the Gene Expression Omnibus, and differentially expressed genes (DEGs) were identified based on the criteria P < 0.05 and |logFC| > 0.5. The DEGs were intersected with autophagy-related genes (ARGs) to explore the relationship between UC pathogenesis and autophagy. LASSO regression, random forest regression, and support vector machine-recursive feature elimination were employed to screen for differentially expressed ARGs. The robustness and generalizability of the intersected genes were validated in external datasets and mouse models, and immune infiltration was analyzed to assess the interaction between UC and the immune system. PEA15 was identified as a potential UC diagnostic marker, and the diagnostic value of SERPINA1, CASP4, and CASP1 was reconfirmed. Our findings provide new insights into the pathogenesis of UC, facilitating early diagnosis and the development of personalized therapeutic strategies.

Indexed as

AutophagyColitis, UlcerativeComputational BiologyAnimalsBiomarkersGene Expression ProfilingHumansMiceBiomarkersAutophagyImmune infiltrationMachine learningR studioUlcerative colitis (UC)

Identifiers

PMID41422315
PMCPMC12722207

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.