Evidence map›Paper›PMID 41420838›Full record

SynthesisAdvanced science (Weinheim, Baden-Wurttemberg, Germany)2026

Principles for Rigorous Design and Application of Synthetic Microbial Communities.

Yuxiao Zhang, Minyu Jing, Lihui Lyu, Li Nie, Xihui Xu, Ru Sun, Xiyuan Xu, Siyu Chen, Shuobing He, Yumeng Zhang and 12 more

Abstract readSystematic Review
In one paragraph

Synthesis in Advanced science (Weinheim, Baden-Wurttemberg, Germany), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Principles for Rigorous Design and Application of Synthetic Microbial Communities.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Pooled it
  2. Review
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Review
  12. Article
  13. Review
  14. Article
  15. Biocontrol Microbial Inoculants SuppressPlants (Basel, Switzerland) · 2026
    Article
  16. Review
  17. Article
  18. Review
  19. Decoding the rhizosphere microbiome againstFrontiers in microbiomes · 2026
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Yuxiao ZhangState Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China.
Minyu JingState Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China.
Lihui LyuState Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China.
Li NieState Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China.
Xihui XuCollege of Life Sciences, Nanjing Agricultural University, Nanjing, China.
Ru SunState Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China.
Xiyuan XuState Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China.
Siyu ChenState Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China.
Shuobing HeState Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China.
Yumeng ZhangState Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China.
Ping HuangState Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China.
Weijie LuoState Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China.
Jiaojiao LiangState Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China.
Guifeng GaoState Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China.
Kunkun FanState Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China.
Teng YangState Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China.
Liyan ZhangState Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China.
Xiao FuState Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China.
Sarah M AllardDepartment of Pediatrics, School of Medicine, University of California San Diego, La Jolla, USA.
Jack A GilbertDepartment of Pediatrics, School of Medicine, University of California San Diego, La Jolla, USA.
Jiabao ZhangState Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China.
Haiyan ChuState Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China.ORCID https://orcid.org/0000-0001-9004-8750

Funding

China Postdoctoral Science Foundation 2024M753333Jiangsu Funding Program for Excellent Postdoctoral Talent 2024ZB437Jiangsu Youth Foundation BK20241701National Key R&D Program of China 2022YFD1500202National Natural Science Foundation of China 42230511National Natural Science Foundation of China 42407176Self-Deployment Program of Nanjing Soil Research Institute of Chinese Academy of Sciences ISSAS2402Strategic Priority Research Program of Chinese Academy of Sciences XDA28020202
6 · The paper itself

Abstract

Synthetic microbial communities (SynComs) are microbial consortia with defined taxonomic and functional traits, so that the combination elicits a predictable response under defined conditions. SynComs are artificially designed to enable inter-species metabolic interactions, metabolic division of labor, and ecological interactions that can elicit phenotypes like colonization stability and environmental adaptation. As an applied tool, SynComs have been deployed in diverse contexts, including agriculture, industry, and environmental ecology. This systematic review explores the processes used to construct SynComs, the mechanisms of metabolic interaction between members, and a review of the different ways that SynComs have been applied. We also explore the challenges for SynCom development and application, and future research directions that could overcome these challenges. SynComs are a powerful tool in our arsenal of applied technologies, but research and application are still nascent. While advances have been made, more research is needed to ensure SynCom technologies do not threaten global ecological security. SynCom technology represents a versatile platform for the controlled manipulation of microbial systems, enabling targeted modification of ecological and physiological processes. This emerging field marks a transition from descriptive biology toward a predictive and engineering-driven framework for understanding and shaping living systems.

Indexed as

Microbial ConsortiaMicrobiotaSynthetic Biologyapplication scenariosdesign and constructionecological functionalityinteraction mechanismSynComs

Identifiers

PMID41420838
PMCPMC12915082

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.