Evidence map›Paper›PMID 41419779›Full record

ArticleScientific data2025

Reconstruction of 2,965 Microbial Genomes from Mangrove Sediments across Guangxi, China.

Ying Liu, Songze Chen, Huiquan Li, Nazia Mahtab, Yue Sun, Yunru Li, Jingjing Song, Dan Sun, Mingzhong Liang, Jianqing Chen and 4 more

Abstract readDataset
PubMed Full text at PMC Publisher
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Ying Liu *Pinglu Canal and Beibu Gulf Coastal Ecosystem Observation and Research Station of Guangxi, Guangxi Key Laboratory of Marine Environmental Disaster Processes and Ecological Protection Technology, College of Marine Sciences, Beibu Gulf University, Qinzhou, 535011, China.
Songze Chen *Shenzhen Ecological and Environmental Monitoring Center of Guangdong Province, Shenzhen, 518049, China.
Huiquan Li *Shenzhen Key Laboratory of Marine Archaea Geo-Omics, Department of Ocean Science and Department of Ocean Science & Engineering, Southern University of Science and Technology, Shenzhen, 518055, China.
Nazia MahtabShenzhen Key Laboratory of Marine Archaea Geo-Omics, Department of Ocean Science and Department of Ocean Science & Engineering, Southern University of Science and Technology, Shenzhen, 518055, China.
Yue SunPinglu Canal and Beibu Gulf Coastal Ecosystem Observation and Research Station of Guangxi, Guangxi Key Laboratory of Marine Environmental Disaster Processes and Ecological Protection Technology, College of Marine Sciences, Beibu Gulf University, Qinzhou, 535011, China.
Yunru LiPinglu Canal and Beibu Gulf Coastal Ecosystem Observation and Research Station of Guangxi, Guangxi Key Laboratory of Marine Environmental Disaster Processes and Ecological Protection Technology, College of Marine Sciences, Beibu Gulf University, Qinzhou, 535011, China.
Jingjing SongPinglu Canal and Beibu Gulf Coastal Ecosystem Observation and Research Station of Guangxi, Guangxi Key Laboratory of Marine Environmental Disaster Processes and Ecological Protection Technology, College of Marine Sciences, Beibu Gulf University, Qinzhou, 535011, China.
Dan SunPinglu Canal and Beibu Gulf Coastal Ecosystem Observation and Research Station of Guangxi, Guangxi Key Laboratory of Marine Environmental Disaster Processes and Ecological Protection Technology, College of Marine Sciences, Beibu Gulf University, Qinzhou, 535011, China.
Mingzhong LiangPinglu Canal and Beibu Gulf Coastal Ecosystem Observation and Research Station of Guangxi, Guangxi Key Laboratory of Marine Environmental Disaster Processes and Ecological Protection Technology, College of Marine Sciences, Beibu Gulf University, Qinzhou, 535011, China.
Jianqing ChenPinglu Canal and Beibu Gulf Coastal Ecosystem Observation and Research Station of Guangxi, Guangxi Key Laboratory of Marine Environmental Disaster Processes and Ecological Protection Technology, College of Marine Sciences, Beibu Gulf University, Qinzhou, 535011, China.
Jing SunFangchenggang Vocational and Technical College, Fangchenggang, 538000, China.
Bin GongPinglu Canal and Beibu Gulf Coastal Ecosystem Observation and Research Station of Guangxi, Guangxi Key Laboratory of Marine Environmental Disaster Processes and Ecological Protection Technology, College of Marine Sciences, Beibu Gulf University, Qinzhou, 535011, China.
Jiaojiao JingStomatological Center, Peking University Shenzhen Hospital, Shenzhen, 518036, China. jiaojiao.jing@outlook.com.
Rongping BuPinglu Canal and Beibu Gulf Coastal Ecosystem Observation and Research Station of Guangxi, Guangxi Key Laboratory of Marine Environmental Disaster Processes and Ecological Protection Technology, College of Marine Sciences, Beibu Gulf University, Qinzhou, 535011, China. rpbu@bbgu.edu.cn.

Funding

Natural Science Foundation of Guangxi Province (Guangxi Natural Science Foundation) 2024GXNSFBA010371Natural Science Foundation of Guangxi Province (Guangxi Natural Science Foundation) 2025GXNSFHA069226Natural Science Foundation of Guangxi Province (Guangxi Natural Science Foundation) 2025GXNSFHA069232
6 · The paper itself

Abstract

Mangrove sediments, being organic-rich and anoxic, host diverse and functionally important microorganisms that play crucial roles in global biogeochemical cycling. In order to characterize this diversity at the genome-resolved level, we collected 38 sediment samples encompassing both surface (0-5 cm) and core (up to 90 cm) depths from six representative mangrove sites across Guangxi Province, China. Using a standardized pipeline for assembly, binning, and dereplication, we reconstructed 2,965 non-redundant metagenome-assembled genomes (MAGs), comprising 2,383 bacterial and 582 archaeal genomes spanning 78 microbial phyla. This dataset captures the high microbial diversity and functional potential within mangrove sediments under variable environmental conditions. It provides a valuable genomic resource for investigating the structure, metabolism, and ecological roles of sediment microbial communities in intertidal, nutrient-rich ecosystems, supporting future studies on microbial adaptation and biogeochemical cycling in global blue carbon environments.

Indexed as

Genome, ArchaealGenome, BacterialGenome, MicrobialGeologic SedimentsArchaeaBacteriaChinaMetagenomeMicrobiotaWetlands

Identifiers

PMID41419779
PMCPMC12858935

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.