Evidence map›Paper›PMID 41419730›Full record

ArticleNature communications2025

MIDAS: rapid, multiplexed molecular profiling for integrated host-pathogen analysis.

Yong Jun Lim, Mohammad Asadi Tokmedash, Matthew Allen, Cameron Gruich, Jun Hee Choi, Changheon Kim, Nicole Falkowski, Bryan Goldsmith, Kathleen A Stringer, Robert P Dickson and 2 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Yong Jun LimDepartment of Chemical and Biological Engineering, Korea University, Seoul, Republic of Korea.ORCID http://orcid.org/0009-0004-2411-4042
Mohammad Asadi Tokmedash *Department of Chemical Engineering, University of Michigan, Ann Arbor, MI, USA.
Matthew Allen *Center for Systems Biology, Massachusetts General Hospital, Boston, MA, USA.
Cameron Gruich *Department of Chemical Engineering, University of Michigan, Ann Arbor, MI, USA.ORCID http://orcid.org/0000-0002-3801-1296
Jun Hee Choi *Department of Chemical and Biological Engineering, Korea University, Seoul, Republic of Korea.ORCID http://orcid.org/0000-0002-3729-5565
Changheon KimDepartment of Chemical Engineering, University of Michigan, Ann Arbor, MI, USA.
Nicole FalkowskiDivision of Pulmonary and Critical Care Medicine, Department of Internal Medicine, University of Michigan Medical School, Ann Arbor, MI, USA.
Bryan GoldsmithDepartment of Chemical Engineering, University of Michigan, Ann Arbor, MI, USA.ORCID http://orcid.org/0000-0003-1264-8018
Kathleen A StringerDivision of Pulmonary and Critical Care Medicine, Department of Internal Medicine, University of Michigan Medical School, Ann Arbor, MI, USA.ORCID http://orcid.org/0000-0003-0238-7774
Robert P DicksonDivision of Pulmonary and Critical Care Medicine, Department of Internal Medicine, University of Michigan Medical School, Ann Arbor, MI, USA.ORCID http://orcid.org/0000-0002-6875-4277
Ki Wan BongDepartment of Chemical and Biological Engineering, Korea University, Seoul, Republic of Korea. bong98@korea.ac.kr.ORCID http://orcid.org/0000-0001-5026-0757
Jouha MinDepartment of Chemical Engineering, University of Michigan, Ann Arbor, MI, USA. jouhamin@umich.edu.ORCID http://orcid.org/0000-0002-6737-7254

Funding

Translational Metabolomics in Critical CareR35GM136312 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KATHLEEN A STRINGER · 2020 to 2026
$2.8M
Understanding Impact of Controlled 3D Topographical Design on Biological InteractionsR35GM157070 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Jouha Min · 2025 to 2026
$749k
Midcareer Investigator Award in Patient-Oriented Research in the Microbiome and Lung DiseaseK24HL159247 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Robert Pickett Dickson · 2022 to 2026
$625k
Ministry of Trade, Industry and Energy (Ministry of Trade, Industry and Energy, Korea) Technology Innovation Program (20018111)National Research Foundation of Korea (NRF) RS-2023-00207833National Research Foundation of Korea (NRF) RS-2025-16066885NHLBI NIH HHS K24 HL159247NIGMS NIH HHS R35 GM136312NIGMS NIH HHS R35 GM157070U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R35GM136312U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R35GM157070V Foundation for Cancer Research (V Foundation) V2023-002
6 · The paper itself

Abstract

Addressing the need for integrated molecular analysis in complex infectious conditions requires technologies that rapidly quantify both pathogens and host responses. This is particularly relevant in sepsis research, where existing tools typically measure either microbial or host biomarkers. Here, we present MIDAS (Multiplexed Intelligent Diffraction Analysis System), a proof-of-concept platform that integrates shape-encoded hydrogel particles with lens-free diffraction imaging and deep learning-based analysis to enable simultaneous quantification of bacterial RNA and inflammatory proteins in a single system optimized for potential point-of-care use. The assay completes multiplexed measurements in under 4 h, significantly faster than standard culture workflows ( ~ 20-40 h). Beyond spiked studies, MIDAS is evaluated using specimens from a clinically relevant porcine sepsis model, showing high concordance with culture, qPCR and ELISA. Although further clinical validation is required, this flexible platform may support the development of accessible host-pathogen profiling tools with broad applications in healthcare, agriculture, food safety, and beyond.

Indexed as

Host-Pathogen InteractionsSepsisAnimalsBiomarkersDeep LearningDisease Models, AnimalHumansHydrogelsRNA, BacterialSwineBiomarkersHydrogelsRNA, Bacterial

Identifiers

PMID41419730
PMCPMC12796348

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.