Evidence map›Paper›PMID 41417616›Full record

ArticleJournal of chemical information and modeling2026

Interaction of Carbon Dots with Nucleic Acids Is Driven by Their Surface Charge.

Andrea Nedělníková, Petr Stadlbauer, Pavel Banáš, Jiří Šponer, Michal Otyepka, Petra Kührová, Markéta Paloncýová

Abstract read
In one paragraph

Article in Journal of chemical information and modeling, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Andrea NedělníkováRegional Center of Advanced Technologies and Materials, Czech Advanced Technology and Research Institute (CATRIN), Palacký University Olomouc, Šlechtitelů 27, 779 00 Olomouc, Czech Republic.
Petr StadlbauerDepartment of Physical Chemistry, Faculty of Science, Palacký University Olomouc, 17. listopadu 12, 771 46 Olomouc, Czech Republic.ORCID 0000-0002-5470-8376
Pavel BanášRegional Center of Advanced Technologies and Materials, Czech Advanced Technology and Research Institute (CATRIN), Palacký University Olomouc, Šlechtitelů 27, 779 00 Olomouc, Czech Republic.ORCID 0000-0002-7137-8225
Jiří ŠponerRegional Center of Advanced Technologies and Materials, Czech Advanced Technology and Research Institute (CATRIN), Palacký University Olomouc, Šlechtitelů 27, 779 00 Olomouc, Czech Republic.ORCID 0000-0001-6558-6186
Michal OtyepkaRegional Center of Advanced Technologies and Materials, Czech Advanced Technology and Research Institute (CATRIN), Palacký University Olomouc, Šlechtitelů 27, 779 00 Olomouc, Czech Republic.ORCID 0000-0002-1066-5677
Petra KührováRegional Center of Advanced Technologies and Materials, Czech Advanced Technology and Research Institute (CATRIN), Palacký University Olomouc, Šlechtitelů 27, 779 00 Olomouc, Czech Republic.ORCID 0000-0003-1593-5282
Markéta PaloncýováRegional Center of Advanced Technologies and Materials, Czech Advanced Technology and Research Institute (CATRIN), Palacký University Olomouc, Šlechtitelů 27, 779 00 Olomouc, Czech Republic.ORCID 0000-0002-6811-7761

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Carbon dots (CDs) are nanoscale carbon materials with tunable optical properties, low toxicity, and modular functionalization, making them a promising material for biomedical applications. For safe and efficient applications in theranostics, it is essential to assess how CDs interact with biomolecules. Here, we focus on the effect of CDs on the structure and function of nucleic acids (NAs), relevant to NA structural stability, chromatin organization, and gene regulation. We performed more than 150 μs of atomistic molecular dynamics simulations, encompassing a diverse set of NA structures, from canonical DNA and RNA helices through noncanonical motifs such as tetraloops and G-quadruplexes, up to nucleosomes. We simulated their interactions with graphitic CDs with two sizes and distinct surface chemistries: neutral hydrophobic (CD

Indexed as

CarbonDNANucleic AcidsQuantum DotsMolecular Dynamics SimulationNucleic Acid ConformationStatic ElectricitySurface PropertiesCarbonDNANucleic Acids

Identifiers

PMID41417616
PMCPMC12801309

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.