Evidence map›Paper›PMID 41416106›Full record

ReviewBiodesign research2025

Utilizing plant synthetic biology to accelerate plant-microbe interactions research.

Xiaohan Yang, Joanna Tannous, Tomás A Rush, Ilenne Del Valle, Shunyuan Xiao, Bal Maharjan, Yang Liu, David J Weston, Kuntal De, Timothy J Tschaplinski and 9 more

Abstract readReview
In one paragraph

Review in Biodesign research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Xiaohan YangBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Joanna TannousBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Tomás A RushBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Ilenne Del ValleBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Shunyuan XiaoInstitute of Biosciences and Biotechnology Research and Department of Plant Science and Landscape Architecture, University of Maryland, College Park, MD, 20850, USA.
Bal MaharjanBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Yang LiuBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
David J WestonBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Kuntal DeBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Timothy J TschaplinskiBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Jun Hyung LeeBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Mallory MorganBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Daniel JacobsonBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Md Torikul IslamBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Feng ChenDepartment of Plant Sciences, University of Tennessee, Knoxville, TN, 37996, USA.
Paul E AbrahamBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Gerald A TuskanBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Mitchel J DoktyczBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Jin-Gui ChenBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plant-microbe interactions are critical to ecosystem resilience and substantially influence crop production. From the perspective of plant science, two important focus areas concerning plant-microbe interactions include: 1) understanding plant molecular mechanisms involved in plant-microbe interfaces and 2) engineering plants for increasing plant disease resistance or enhancing beneficial interactions with microbes to increase their resilience to biotic and abiotic stress conditions. Molecular biology and genetics approaches have been used to investigate the molecular mechanisms underlying plant responses to various beneficial and pathogenic microbes. While these approaches are valuable for elucidating the functions of individual genes and pathways, they fall short of unraveling the complex cross-talk across pathways or systems that plants employ to respond and adapt to environmental stresses. Also, genetic engineering of plants to increase disease resistance or enhance symbiosis with microbes has mainly been attempted or conducted through targeted manipulation of single genes/pathways of plants. Recent advancements in synthetic biology tool development are paving the way for multi-gene characterization and engineering in plants in relation to plant-microbe interactions. Here, we briefly summarize the current understanding of plant molecular pathways involved in plant interactions with beneficial and pathogenic microorganisms. Then, we highlight the progress in applying plant synthetic biology to elucidate the molecular basis of plant responses to microbes, enhance plant disease resistance, engineer synthetic symbiosis, and conduct

Indexed as

Disease resistanceGenetic engineeringPlant-microbe interactionsSymbiosisSynthetic biology

Identifiers

PMID41416106
PMCPMC12709900

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.