Evidence map›Paper›PMID 41415717›Full record

ArticleBiodesign research2025

TropiCODB: A multi-omics resource for supporting biodesign in tropical crops.

Wenbao Dai, Shuang He, Yunqing Luo, Chengjun Zhao, Zhijuan Yang, Junyu Zhang, Qibin Wu, Wenquan Wang, Fei Chen

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Biodesign research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Rhythmic Mechanisms Governing CAM Photosynthesis inInternational journal of molecular sciences · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Wenbao DaiNational Key Laboratory for Tropical Crop Breeding, College of Breeding and Multiplication (Sanya Institute of Breeding and Multiplication), Hainan University, Sanya, 572025, China.
Shuang HeNational Key Laboratory for Tropical Crop Breeding, College of Breeding and Multiplication (Sanya Institute of Breeding and Multiplication), Hainan University, Sanya, 572025, China.
Yunqing LuoNational Key Laboratory for Tropical Crop Breeding, College of Breeding and Multiplication (Sanya Institute of Breeding and Multiplication), Hainan University, Sanya, 572025, China.
Chengjun ZhaoNational Key Laboratory for Tropical Crop Breeding, College of Breeding and Multiplication (Sanya Institute of Breeding and Multiplication), Hainan University, Sanya, 572025, China.
Zhijuan YangNational Key Laboratory for Tropical Crop Breeding, College of Breeding and Multiplication (Sanya Institute of Breeding and Multiplication), Hainan University, Sanya, 572025, China.
Junyu ZhangNational Key Laboratory for Tropical Crop Breeding, College of Breeding and Multiplication (Sanya Institute of Breeding and Multiplication), Hainan University, Sanya, 572025, China.
Qibin WuNational Key Laboratory for Tropical Crop Breeding, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences/Sugarcane Research Institute, China.
Wenquan WangNational Key Laboratory for Tropical Crop Breeding, College of Breeding and Multiplication (Sanya Institute of Breeding and Multiplication), Hainan University, Sanya, 572025, China.
Fei ChenNational Key Laboratory for Tropical Crop Breeding, College of Breeding and Multiplication (Sanya Institute of Breeding and Multiplication), Hainan University, Sanya, 572025, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tropical crops play a pivotal role in ensuring global food security and driving sustainable agricultural development, particularly in regions with limited resources. However, the complexity of tropical crop genomes and the lack of integrated omics data pose significant challenges to genetic improvement and biodesign research. TropiCODB is a comprehensive multi-omics database designed to address these challenges by integrating high-quality genomic, variome, transcriptomic, metabolomic, and phenotypic datasets for eight economically significant tropical crops, including cassava, sugarcane, and oil palm. Advanced tools such as gene family analysis, miRNA profiling, and precision guideRNA design are seamlessly incorporated, offering unprecedented support for functional genomics and molecular breeding. TropiCODB's user-friendly interface and dynamic visualization capabilities enable researchers to efficiently explore key genetic mechanisms and design targeted breeding strategies. By leveraging innovative technologies and curated datasets, TropiCODB provides a robust foundation for advancing tropical agriculture through precision biodesign.

Indexed as

BiodesignFunctional genomicsMolecular breedingMulti-omics databaseTropical crops

Identifiers

PMID41415717
PMCPMC12709899

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.