Evidence map›Paper›PMID 41411409›Full record

ArticleScience (New York, N.Y.)2026

Multistep genomics on single cells and live cultures in subnanoliter capsules.

Ignas Mazelis, Haoxiang Sun, Arpita Kulkarni, Theresa L Torre, Allon M Klein

Abstract read
PubMed Publisher
In one paragraph

Article in Science (New York, N.Y.), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Single-cell insights into plant growth, adaptation, and evolution.Journal of integrative plant biology · 2026
    Review
  4. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Ignas MazelisDepartment of Systems Biology, Harvard Medical School, Boston, MA, USA.ORCID 0000-0001-8506-4553
Haoxiang SunDepartment of Systems Biology, Harvard Medical School, Boston, MA, USA.
Arpita KulkarniSingle Cell Core, Harvard Medical School, Boston, MA, USA.ORCID 0000-0003-0775-8044
Theresa L TorreDepartment of Systems Biology, Harvard Medical School, Boston, MA, USA.ORCID 0009-0005-1590-0567
Allon M KleinDepartment of Systems Biology, Harvard Medical School, Boston, MA, USA.ORCID 0000-0001-8913-7879

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Single-cell sequencing methods uncover natural and induced variation between cells. Many functional genomic methods, however, require multiple steps that cannot yet be scaled to high throughput, including assays on living cells. In this study, we developed capsules with amphiphilic gel envelopes (CAGEs), which selectively retain cells and large analytes while being freely accessible to media, enzymes, and reagents. Capsules enable high-throughput multistep assays combining live-cell culture with genome-wide readouts. We established methods for barcoding CAGE DNA libraries and applied them to measure persistence of gene expression programs in cells by capturing the transcriptomes of tens of thousands of expanding clones in CAGEs. The compatibility of CAGEs with diverse enzymatic reactions will facilitate the expansion of the current repertoire of single-cell high-throughput measurements and their extension to live-cell assays.

Indexed as

GenomicsSingle-Cell AnalysisCell Culture TechniquesGelsGene Expression ProfilingGene LibraryHumansTranscriptomeGels

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.