Evidence map›Paper›PMID 41411371›Full record

ArticlePLoS genetics2025

A simple method to efficiently generate structural variation in plants.

Lindsey L Bechen, Naiyara Ahsan, Alefiyah Bahrainwala, Mary Gehring, Prasad R V Satyaki

Abstract read
In one paragraph

Article in PLoS genetics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 synthesis or guideline pooled it.

  1. Research evolution of flat peach (Frontiers in plant science · 2025
    Pooled it
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Lindsey L BechenWhitehead Institute for Biomedical Research, Cambridge, Massachusetts, United States of America.
Naiyara AhsanDepartment of Biological Sciences, University of Toronto Scarborough, Toronto, Ontario, Canada.ORCID https://orcid.org/0009-0009-4724-1462
Alefiyah BahrainwalaDepartment of Biological Sciences, University of Toronto Scarborough, Toronto, Ontario, Canada.
Mary GehringWhitehead Institute for Biomedical Research, Cambridge, Massachusetts, United States of America.ORCID https://orcid.org/0000-0003-2280-1522
Prasad R V SatyakiWhitehead Institute for Biomedical Research, Cambridge, Massachusetts, United States of America.ORCID https://orcid.org/0000-0002-5035-7652

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phenotypic variation is essential for the selection of new traits of interest. Structural variants, consisting of deletions, duplications, inversions, and translocations, have greater potential for phenotypic consequences than single nucleotide variants. Pan-genome studies have highlighted the importance of structural variation in the evolution and selection of novel traits. Here, we describe a simple method to induce structural variation in plants. We demonstrate that a short period of growth on the topoisomerase II inhibitor etoposide induces heritable structural variation and altered phenotypes in Arabidopsis thaliana at high frequency. Using long-read sequencing and genetic analyses, we identified deletions and inversions underlying semi-dominant and recessive phenotypes. This method requires minimal resources, is potentially applicable to any plant species, and can replace irradiation as a source of induced large-effect structural variation.

Indexed as

ArabidopsisGenomic Structural VariationChromosome InversionEtoposideGenetic VariationGenome, PlantPhenotypeTopoisomerase II InhibitorsEtoposideTopoisomerase II Inhibitors

Identifiers

PMID41411371
PMCPMC12725597

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.