Evidence map›Paper›PMID 41411219›Full record

ArticlePLoS biology2025

Post-transcriptional suppression of the pioneer factor Zelda protects the adult Drosophila testis from activation of the ovary program.

Sneh Harsh, Hsiao-Yun Liu, Pradeep K Bhaskar, Christine Rushlow, Erika A Bach

Abstract read
In one paragraph

Article in PLoS biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Stem cell competition.Current topics in developmental biology · 2026
    Review
  4. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Sneh HarshDepartment of Biochemistry and Molecular Pharmacology, New York University Grossman School of Medicine, New York, New York, United States of America.
Hsiao-Yun LiuDepartment of Biology, New York University, New York, New York, United States of America.
Pradeep K BhaskarLaboratory of Biochemistry and Genetics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, Maryland, United States of America.
Christine RushlowDepartment of Biology, New York University, New York, New York, United States of America.
Erika A BachDepartment of Biochemistry and Molecular Pharmacology, New York University Grossman School of Medicine, New York, New York, United States of America.ORCID 0000-0002-5997-4489

Funding

Regulation of zygotic genome activation by ZeldaR01GM063024 · NIGMS · NEW YORK UNIVERSITY · PI RUSHLOW, CHRISTINE A · 2002 to 2020
$5.2M
Eludicating the Molecular Mechanisms That Regulate Stem Cell Numbers in VivoR01GM085075 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI BACH, ERIKA A · 2009 to 2023
$4.3M
Pioneer factor activity in transcription and DNA replicationR35GM148241 · NIGMS · NEW YORK UNIVERSITY · PI CHRISTINE A RUSHLOW · 2023 to 2026
$1.6M
Elucidating mechanisms of spermatogonial stem cell competitionR35GM156624 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Erika A Bach · 2025 to 2026
$909k
The gene network underlying neural stem cell identityR03HD080158 · NICHD · NEW YORK UNIVERSITY · PI RUSHLOW, CHRISTINE A · 2014 to 2015
$145k
NICHD NIH HHS R03 HD080158NIGMS NIH HHS R01 GM063024NIGMS NIH HHS R01 GM085075NIGMS NIH HHS R35 GM148241NIGMS NIH HHS R35 GM156624
6 · The paper itself

Abstract

Maintenance of somatic sex identity is essential for adult tissue function. In the Drosophila testis, adult somatic stem cells known as cyst stem cells (CySCs) require the transcription factor Chinmo to preserve male identity. Loss of Chinmo leads to reprogramming of CySCs into their ovarian counterparts through induction of the female-specific RNA-binding protein TransformerF (TraF), though the underlying mechanism has remained unclear. Here, we identify the pioneer transcription factor Zelda (Zld) as a critical mediator of this sex reversal. In wild-type CySCs, zld mRNA is repressed by microRNAs (miRs), but following Chinmo loss, these miRs are downregulated, allowing zld mRNA to be translated. Zld is necessary for feminization of chinmo-mutant CySCs, and ectopic expression of Zld in wild-type CySCs is sufficient to induce TraF and drive female reprogramming. Two Zld target genes, qkr58E-2 and Ecdysone receptor (EcR), are upregulated in chinmo-mutant CySCs and are normally female-biased in adult gonads. Qkr58E-2 facilitates TraF production, while EcR promotes female gene expression programs. Zld overexpression feminizes otherwise wild-type CySCs by upregulating EcR, which in turn downregulates the chinmo gene. Strikingly, overexpression of Zld also feminizes adult male adipose tissue by inducing TraF and downregulating Chinmo, indicating that Zld can override male identity in multiple adult XY tissues. Together, these findings uncover a post-transcriptional mechanism in which miRs-mediated repression of a pioneer factor safeguards male identity and prevents inappropriate activation of the female program in adult somatic cells.

Indexed as

Drosophila melanogasterDrosophila ProteinsOvaryTestisTranscription FactorsAnimalsFemaleMaleMicroRNAsNerve Tissue ProteinsReceptors, SteroidRNA-Binding ProteinsSex Determination ProcessesStem CellsChinmo protein, DrosophilaDrosophila Proteinsecdysone receptorMicroRNAsNerve Tissue ProteinsReceptors, SteroidRNA-Binding ProteinsTranscription Factors

Identifiers

PMID41411219
PMCPMC12714197

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.