Evidence map›Paper›PMID 41411065›Full record

ArticleJCI insight2026

Multimodal analyses of early, untreated systemic sclerosis skin identify a proinflammatory vascular niche of macrophage-fibroblast signaling.

Helen C Jarnagin, Rezvan Parvizi, Zhiyun Gong, Rosemary Gedert, Xianying Xing, Lam Alex C Tsoi, Rachael Bogle, Madeline J Morrisson, Laurent Perreard, Patricia A Pioli and 4 more

Abstract read
In one paragraph

Article in JCI insight, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Helen C JarnaginDepartment of Biomedical Data Science, and.
Rezvan ParviziDepartment of Biomedical Data Science, and.
Zhiyun GongDepartment of Biomedical Data Science, and.
Rosemary GedertDepartment of Medicine, Division of Rheumatology, University of Michigan, Ann Arbor, Michigan, USA.
Xianying XingDepartment of Medicine, Division of Dermatology, University of Michigan, Ann Arbor, Michigan, USA.
Lam Alex C TsoiDepartment of Medicine, Division of Dermatology, University of Michigan, Ann Arbor, Michigan, USA.
Rachael BogleDepartment of Medicine, Division of Rheumatology, University of Michigan, Ann Arbor, Michigan, USA.
Madeline J MorrissonDepartment of Biomedical Data Science, and.
Laurent PerreardDepartment of Biomedical Data Science, and.
Patricia A PioliDepartment of Microbiology and Immunology, Geisel School of Medicine at Dartmouth, Hanover, New Hampshire, USA.
Fred KollingDepartment of Biomedical Data Science, and.
Johann E GudjonssonDepartment of Medicine, Division of Rheumatology, University of Michigan, Ann Arbor, Michigan, USA.
Dinesh KhannaDepartment of Medicine, Division of Rheumatology, University of Michigan, Ann Arbor, Michigan, USA.
Michael L WhitfieldDepartment of Biomedical Data Science, and.

Funding

Translational Engineering in Cancer (TEC)P30CA023108 · NCI · DARTMOUTH COLLEGE · PI Fred W Kolling IV · 1985 to 2026
$91.3M
Zhao - Proj 2P20GM130454 · NIGMS · DARTMOUTH COLLEGE · PI MICHAEL L WHITFIELD · 2019 to 2026
$27.2M
University of Michigan Skin Biology and Diseases Resource-based CenterP30AR075043 · NIAMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Johann Eli Gudjonsson · 2019 to 2026
$6.6M
Role of the Hippo pathway in scleroderma pathogenesisR01AI183620 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Johann Eli Gudjonsson, DINESH KHANNA · 2024 to 2026
$1.8M
Exosome-mediated Cooperative Mechanisms of Macrophage/Fibroblast Activation in Systemic SclerosisR21AI169420 · NIAID · DARTMOUTH COLLEGE · PI PIOLI, PATRICIA A., WHITFIELD, MICHAEL L · 2022 to 2023
$464k
Cellular Immunotherapy to Combat Fibrosis and Inflammation in Systemic SclerosisR21AI178651 · NIAID · DARTMOUTH COLLEGE · PI PIOLI, PATRICIA A., WHITFIELD, MICHAEL L · 2023 to 2024
$450k
Acquisition of the NextSeq2000 Sequencing platform to Increase Next Generation Sequencing Throughput While Reducing Costs at DartmouthS10OD030242 · OD · DARTMOUTH COLLEGE · PI KOLLING IV, FRED W · 2021 to 2021
$321k
NCI NIH HHS P30 CA023108NIAID NIH HHS R01 AI183620NIAID NIH HHS R21 AI169420NIAID NIH HHS R21 AI178651NIAMS NIH HHS P30 AR075043NIGMS NIH HHS P20 GM130454NIH HHS S10 OD030242
6 · The paper itself

Abstract

Uncovering the early interactions and spatial distribution of dermal fibroblasts and immune cells in treatment-naive patients with diffuse cutaneous systemic sclerosis (SSc) is critical to understanding the earliest events of skin fibrosis. We generated an integrated multiomic dataset of early-stage, treatment-naive diffuse cutaneous SSc skin. Skin biopsies were analyzed by single-nuclei multiome sequencing (snRNA-Seq and snATAC-Seq) and two spatial transcriptomic methods to comprehensively determine molecular changes. We identified an immunomodulatory niche within the papillary, hypodermis, and vascular regions enriched for activated myeloid cells and fibroblasts characterized by expression of genes such as CXCL12, APOE, and C7. Pathway analyses showed significant enrichment of PI3K/AKT/mTOR signaling pathway expression in these cellular niches, driven by profibrotic growth factor signaling networks. Macrophage subclustering showed SSc-specific macrophage activation of IL-6/JAK/STAT signaling and enrichment of oxidative phosphorylation pathways. Ligand-receptor analysis revealed that SSc macrophages secrete PDGF and TGF-β to activate SSc-dominant fibroblast subclusters. Spatial transcriptomic analyses showed monocyte-derived MRC1+ macrophages express PDGF near PDGFRhiTHY1hi fibroblasts. Multiomic data integration and spatial transcriptomic neighborhood analysis revealed the colocalization of fibroblasts, macrophages, and T cells around the vasculature. These data suggest that interactions between activated immune cells and immunomodulatory fibroblasts around vascular niches are an early event in scleroderma pathogenesis.

Indexed as

FibroblastsMacrophagesScleroderma, DiffuseScleroderma, SystemicSkinAdultFemaleFibrosisHumansMaleMiddle AgedSignal TransductionTranscriptomeAutoimmunityDermatologyFibrosisSkinTranscriptomics

Identifiers

PMID41411065
PMCPMC12893110

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.