Evidence map›Paper›PMID 41408581›Full record

ArticleBMC pharmacology & toxicology2025

Deciphering bisphenol A (BPA)-elicited osteoarthritis mechanisms through network toxicology and molecular docking, then de novo generation of novel therapeutic candidates.

Sumei Xu, Liping Jiang, Zhuo Zhang, Xin Luo, Wei Wu, Huilan Wu, Zhichun Huang, Zackary Falls, Ram Samudrala, Zhirong Tan

Abstract read
In one paragraph

Article in BMC pharmacology & toxicology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Sumei XuPhase I Clinical Trial Center, Xiangya Hospital, Central South University, Hunan, 410008, Changsha, P. R. China.
Liping JiangDepartment of Clinical Pharmacology, Xiangya Hospital, Central South University, Hunan, 410008, Changsha, P. R. China.
Zhuo ZhangDepartment of Clinical Pharmacology, Xiangya Hospital, Central South University, Hunan, 410008, Changsha, P. R. China.
Xin LuoDepartment of Clinical Pharmacology, Xiangya Hospital, Central South University, Hunan, 410008, Changsha, P. R. China.
Wei WuDepartment of Clinical Pharmacology, Xiangya Hospital, Central South University, Hunan, 410008, Changsha, P. R. China.
Huilan WuDepartment of Clinical Pharmacology, Xiangya Hospital, Central South University, Hunan, 410008, Changsha, P. R. China.
Zhichun HuangDepartment of Clinical Pharmacology, Xiangya Hospital, Central South University, Hunan, 410008, Changsha, P. R. China.
Zackary FallsDepartment of Biomedical Informatics, University at Buffalo, Buffalo, NY, 14260, USA.
Ram SamudralaDepartment of Biomedical Informatics, University at Buffalo, Buffalo, NY, 14260, USA. ram@compbio.org.
Zhirong TanDepartment of Clinical Pharmacology, Xiangya Hospital, Central South University, Hunan, 410008, Changsha, P. R. China. 803119@csu.edu.cn.

Funding

University of Buffalo Clinical and Translational Science Institute - Supplement SchulyerUL1TR001412 · NCATS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI MURPHY, TIMOTHY F · 2015 to 2024
$33.8M
National Library of Medicine Conference 2022T15LM012495 · NLM · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI PETER L. ELKIN · 2017 to 2026
$4.3M
NOVEL PARADIGMS FOR DRUG DISCOVERY: COMPUTATIONAL MULTITARGET SCREENINGDP1OD006779 · OD · UNIVERSITY OF WASHINGTON · PI SAMUDRALA, RAM · 2010 to 2011
$1.7M
A translational bioinformatics approach to elucidate and mitigate polypharmacy induced adverse drug reactionsK01DA056690 · NIDA · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI Zackary Michael Falls · 2022 to 2026
$1.0M
Buffalo Research Innovation in Genomic and Healthcare Technology (BRIGHT) Short-Term Training and EducationR25LM014213 · NLM · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI PETER L. ELKIN, RAM SAMUDRALA · 2022 to 2026
$668k
Key Project Funded by Hunan Provincial Health Commission A202313018918Natural Science Foundation of Hunan Province 2024JJ7630NCATS NIH HHS UL1 TR001412NIDA NIH HHS K01 DA056690NIH HHS DP1 OD006779NLM NIH HHS R25 LM014213NLM NIH HHS T15 LM012495
6 · The paper itself

Abstract

objectiveBisphenol A (BPA), a pervasive environmental pollutant, is increasingly associated with osteoarthritis (OA) development, yet its molecular mechanisms remain unknown. Currently, there is no definitive cure for OA.

methodsBPA targets were predicted using STITCH and Swiss Target Prediction, while OA-related targets were collected from GeneCards, OMIM, and the Therapeutic Target Database (TTD). Protein-protein interaction (PPI) networks were constructed using STRING and visualized in Cytoscape to identify hub targets. Gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses were performed, and molecular docking with AutoDock evaluated BPA-core target interactions. We employed our Computational Analysis of Novel Drug Opportunities (CANDO) platform for de novo drug prediction.

resultsSystematic bioinformatics analysis identified 26 candidate targets, with ESR1, PTGS2, CCL2, FLNA, and TRPV1 as key hubs. Pathway analysis revealed involvement in calcium ion transport, muscle contraction, IL-17 signaling, and estrogen signaling. Molecular docking confirmed strong BPA-target binding affinities. CANDO predicted 14 potential OA treatments, including glucosamine, ibuprofen, celecoxib, indomethacin, palmitic acid, and linoleic acid. Notably, qRT-PCR validation revealed that ESR1, PTGS2, CCL2, and TRPV1 were highly expressed, whereas FLNA was expressed at lower levels in the osteoarthritis blood samples.

conclusionsThis study elucidates BPA's molecular mechanisms in OA and identifies promising therapeutic candidates. The integration of network toxicology, molecular docking, and computational drug discovery provides a robust framework for understanding environmental toxicants and advancing OA therapies.

Indexed as

Benzhydryl CompoundsOsteoarthritisPhenolsBisphenol A CompoundsHumansMolecular Docking SimulationProtein Interaction MapsBenzhydryl Compoundsbisphenol ABisphenol A CompoundsPhenolsBisphenol AComputational biologyMachine learningNetwork toxicologyOsteoarthritis

Identifiers

PMID41408581
PMCPMC12822084

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.