Evidence map›Paper›PMID 41407884›Full record

ArticleCommunications biology2025

Genomics of Shiga toxin-producing Escherichia coli from asymptomatic carriers in Japan highlights risk-adaptive control.

Yumi Imai, Miki Okuno, Yuki Hoshiko, Hiroshi Kaneko, Toshio Sato, Akio Noguchi, Ken-Ichi Lee, Takeshi Yamamoto, Haruyuki Nakayama-Imaohji, Tomomi Kuwahara and 2 more

Abstract read
In one paragraph

Article in Communications biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Yumi ImaiDivision of Microbiology, Department of Infectious Medicine, Kurume University School of Medicine, Kurume, Fukuoka, Japan.
Miki OkunoDivision of Microbiology, Department of Infectious Medicine, Kurume University School of Medicine, Kurume, Fukuoka, Japan.ORCID http://orcid.org/0000-0002-6164-1878
Yuki HoshikoDivision of Microbiology, Department of Infectious Medicine, Kurume University School of Medicine, Kurume, Fukuoka, Japan.ORCID http://orcid.org/0000-0003-2941-7208
Hiroshi KanekoJapan Microbiological Laboratory, Miyagi, Japan.
Toshio SatoJapan Microbiological Laboratory, Miyagi, Japan.
Akio NoguchiJapan Microbiological Laboratory, Miyagi, Japan.
Ken-Ichi LeeDepartment of Bacteriology I, National Institute of Infectious Diseases, Toyama, Shinjuku-ku, Tokyo, Japan.ORCID http://orcid.org/0000-0002-4765-0989
Takeshi YamamotoDivision of Microbiology, Department of Infectious Medicine, Kurume University School of Medicine, Kurume, Fukuoka, Japan.
Haruyuki Nakayama-ImaohjiDepartment of Molecular Microbiology, Kagawa University Faculty of Medicine, Kagawa, Japan.
Tomomi KuwaharaDepartment of Molecular Microbiology, Kagawa University Faculty of Medicine, Kagawa, Japan.
Sunao IyodaDepartment of Bacteriology I, National Institute of Infectious Diseases, Toyama, Shinjuku-ku, Tokyo, Japan.
Yoshitoshi OguraDivision of Microbiology, Department of Infectious Medicine, Kurume University School of Medicine, Kurume, Fukuoka, Japan. y_ogura@kurume-u.ac.jp.ORCID http://orcid.org/0000-0002-4509-2653

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Shiga toxin-producing Escherichia coli (STEC) is detected in healthy individuals, who face work restrictions to prevent secondary transmission. To assess the virulence potential, we sequence 495 STEC isolates from healthy food handlers and social welfare workers in 2021 and compare them with 250 isolates from symptomatic patients. Nineteen serotypes (e.g., O156:H25, O174:H21, O105:H7) are significantly associated with asymptomatic carriers (SAAC), while five serotypes (O157:H7, O26:H11, O111:H8, O121:H19, O145:H28) are significantly associated with symptomatic patients (SAPA). SAPA strains frequently carry major virulence factors, including the LEE-encoded type III secretion system (100%) and Shiga toxin 2a (63.2%), which are less common in SAAC strains (38.3% and 3.7%). Among the 495 carrier isolates, 35 (7.1%) are high-risk, 178 (36.0%) moderate-risk, and 282 (57.0%) low-risk based on serotype and virulence markers. These findings suggest many strains in asymptomatic carriers have limited virulence, underscoring the need for risk-based strategies that avoid unnecessary restrictions.

Indexed as

Carrier StateEscherichia coli InfectionsGenome, BacterialGenomicsShiga-Toxigenic Escherichia coliHumansJapanSerogroupVirulenceVirulence FactorsVirulence Factors

Identifiers

PMID41407884
PMCPMC12929804

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.