Evidence map›Paper›PMID 41407509›Full record

ArticleThe journal of gene medicine2025

Tumor Immune Contexture Model Predicts Prognosis and Immunotherapy Response in Gastric Cancer.

Jiexuan Wang, Xin Yang, Xuan Dai, Zhiqian Hu, Xinxing Li

Abstract read
In one paragraph

Article in The journal of gene medicine, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jiexuan WangDepartment of General Surgery, Tongji Hospital, School of Medicine, Tongji University, Shanghai, China.
Xin YangDepartment of General Surgery, Tongji Hospital, School of Medicine, Tongji University, Shanghai, China.
Xuan DaiDepartment of General Surgery, Tongji Hospital, School of Medicine, Tongji University, Shanghai, China.
Zhiqian HuDepartment of General Surgery, Tongji Hospital, School of Medicine, Tongji University, Shanghai, China.
Xinxing LiDepartment of General Surgery, Tongji Hospital, School of Medicine, Tongji University, Shanghai, China.

Funding

Clinical 'Five New' Innovation and Development Project ITJ (ZD)2308Shanghai 2023 Annual 'Science and Technology Innovation Action Plan' Special Project for Medical Innovation ResearchShanghai 2023 Annual 'Science and Technology Innovation Action Plan' Special Project for Medical Innovation Research SKW2311Shanghai Municipal Health Commission Research Project WSJ2303Shanghai Natural Science Foundation General Program SKW2030Tongji Hospital Clinical Research Project ITJ (ZD)2104Tongji Hospital Clinical Research Project RCQD2102Tongji Hospital Talent ProgramTongji Hospital Talent Program: Ganquan Rising StarTongji Hospital Talent RecruitmentTongji Hospital Talent Recruitment, Key Projects
6 · The paper itself

Abstract

backgroundGastric cancer (GC) is highly heterogeneous, and current prognostic models fail to fully capture tumor immune characteristics, limiting personalized treatment. This study introduces the Tumor Immune Environment Score (TIES), an immune-based prognostic model designed to enhance risk stratification and predict response to immunotherapy.

methodsTranscriptomic and clinical data from seven GC cohorts, comprising a total of 1487 patients, were analyzed. The training cohort included GSE15459, GSE62254, GSE84433, and GSE13861, while the validation cohort comprised GSE26899, GSE26901, and TCGA-STAD. Immune-related gene signatures were quantified using ssGSEA and subsequently analyzed via LASSO and Cox regression. Clinical applicability was quantified using decision-curve analysis (DCA) and reclassification metrics (category-free NRI/IDI) for TIES versus TIES + pathological stage. Immunotherapy response was assessed using data from GSE183924, and its associations with immune characteristics, molecular alterations, and drug sensitivity were investigated. For experimental confirmation, we established a 12-gene RT-qPCR panel in 30 institutional GC specimens and computed a weighted qPCR surrogate (qTIES).

resultsA high TIES was associated with worse OS (HR = 2.44, p < 0.001) and DFS (HR = 2.25, p < 0.001). TIES was an independent prognostic factor and demonstrated superior predictive accuracy compared to TNM staging (AUC = 0.75-0.79 vs. 0.61-0.64, p < 0.001). Integrating clinical-pathological features with TIES significantly enhanced predictive performance (AUC = 0.75-0.78 vs. 0.61-0.63, p < 0.01). A low TIES was indicative of an immune-inflamed subtype, characterized by a higher TMB (p < 0.01) and a greater likelihood of response to immunotherapy (HR = 0.24, p = 0.014). TIES outperformed TIDE in predicting immunotherapy outcomes, achieving a higher OS C-index (0.780 vs. 0.743) and DFS C-index (0.664 vs. 0.610). At 3 years, TIES + stage yielded a greater net benefit than TIES alone across clinically relevant thresholds (DCA) and improved NRI/IDI.The qPCR panel reproduced axis biology (CSR/TGF-βincreased with NK/Th2 decreased), correlated with pathological stage, stratified OS/DFS by Kaplan-Meier, and showed 3-year discrimination.

conclusionTIES represents a robust immune-based prognostic tool for GC, facilitating improved risk stratification and immunotherapy response prediction. Its integration into clinical practice, particularly in combination with clinical-pathological features, may enhance personalized treatment strategies and improve patient outcomes.

Indexed as

Biomarkers, TumorImmunotherapyStomach NeoplasmsTumor MicroenvironmentAgedFemaleGene Expression ProfilingGene Expression Regulation, NeoplasticHumansMaleMiddle AgedPrognosisTranscriptomeBiomarkers, Tumorgastric cancerimmune microenvironmentimmunotherapymachine learningprognostic model

Identifiers

PMID41407509
PMCPMC12711383

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.