Evidence map›Paper›PMID 41407005›Full record

ArticleBiological psychiatry2026

Integrating Multi-Omics Summary Data Identifies Candidate Molecular Mechanisms for Major Depression.

Laurence Nisbet, Yang Wu, Mark Adams, Mary-Ellen Lynall, Jens Hjerling-Leffler, Psychiatric Genomics Consortium Functional Genomics Working Group, Naomi R Wray, Andrew M McIntosh, Xueyi Shen

Abstract read
In one paragraph

Article in Biological psychiatry, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Laurence NisbetDivision of Psychiatry, University of Edinburgh, Edinburgh, United Kingdom.
Yang WuInstitute of Rare Diseases, West China Hospital of Sichuan University, Chengdu, China.
Mark AdamsDivision of Psychiatry, University of Edinburgh, Edinburgh, United Kingdom.
Mary-Ellen LynallDepartment of Psychiatry, University of Oxford, Oxford, United Kingdom; Department of Psychiatry, University of Cambridge, Cambridge, United Kingdom.
Jens Hjerling-LefflerDepartment of Medical Biochemistry and Biophysics, Karolinska Institute, Stockholm, Sweden.
Psychiatric Genomics Consortium Functional Genomics Working Group
Naomi R WrayDepartment of Psychiatry, University of Oxford, Oxford, United Kingdom; Institute for Molecular Bioscience, University of Queensland, Brisbane, Queensland, Australia.
Andrew M McIntoshDivision of Psychiatry, University of Edinburgh, Edinburgh, United Kingdom.
Xueyi ShenDivision of Psychiatry, University of Edinburgh, Edinburgh, United Kingdom. Electronic address: xueyi.shen@ed.ac.uk.

Funding

1/7 PGC: Advancing Discovery and ImpactR01MH124871 · NIMH · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BULIK, CYNTHIA M, SULLIVAN, PATRICK F · 2021 to 2025
$3.5M
5/7 Psychiatric Genomics Consortium: Advancing Discovery and ImpactR01MH124873 · NIMH · CARDIFF UNIVERSITY · PI LEWIS, CATHRYN, O'DONOVAN, MICHAEL · 2021 to 2025
$2.6M
NIMH NIH HHS R01 MH124871NIMH NIH HHS R01 MH124873Wellcome Trust
6 · The paper itself

Abstract

backgroundMajor depression (MD) is the most common psychiatric disorder. However, despite having a significant genetic component, the underlying biological mechanisms remain poorly understood. Our analyses leveraged molecular quantitative trait loci (xQTL) data to identify molecular biomarkers for MD.

methodsWe used OPERA (Omics Pleiotropic Association) software to identify molecular phenotypes associated with MD through shared causal variants, using genome-wide association study (GWAS) summary statistics and xQTL data for 5 phenotypes in blood and brain tissues. The xQTL phenotypes were gene expression, DNA methylation, splicing variation, chromatin accessibility, and protein abundance.

resultsWe identified 939 genes in blood tissues and 607 genes in brain tissues associated with MD via at least 1 molecular phenotype. Drug targets were enriched in our significant genes in both tissues. A total of 23 genes showed associations via 3 or more molecular phenotypes, providing robust evidence for their causal role in MD and offering insights into their biomolecular mechanisms. These high-priority associations included genes that have been previously identified by GWASs of MD such as CDH13 and RAB27B as well as novel associations such as H6PD.

conclusionsOur results highlight promising new targets for biomarker and drug target identification and successfully expand on GWAS findings to identify novel associations with MD. However, our study took a broad approach using bulk brain and blood tissues. Future research should expand these analyses into cell- and region-specific contexts.

Indexed as

Major Depressive DisorderQuantitative Trait LociBrainCadherinsDNA MethylationGenetic Predisposition to DiseaseGenome-Wide Association StudyHumansMultiomicsPhenotypeCadherinsH-cadherinGeneticsMajor depressionMendelian randomizationMolecular mechanismsMulti-omicsPsychiatry

Identifiers

PMID41407005
PMCPMC13527628

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.