Evidence map›Paper›PMID 41405788›Full record

ArticleMolecular neurobiology2025

Integrated Bioinformatic Analysis and Experimental Validation for Crosstalk Among Various Forms of Cell Death in Spinal Cord Injury.

Kuileung Tong, Jianfeng Li, Shan Li, Shiming Li, Guoliang Chen, Shaoyu Liu, Yuhang Li, Ningning Chen, Bin Liu

Abstract read
PubMed Publisher
In one paragraph

Article in Molecular neurobiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Transcriptomics Insights into Spinal Cord Injury for Therapy Development.International journal of molecular sciences · 2026
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Kuileung Tong *Department of Orthopedics, Third Affiliated Hospital of Sun Yat-Sen University, Guangzhou, Guangdong, 510630, China.
Jianfeng Li *Guangdong Provincial Biomedical Innovation Platform of Regeneration and Repair of Spinal Cord and Nerve Injury, Department of Orthopedic Surgery, The Seventh Affiliated Hospital, Sun Yat-Sen University, Shenzhen, Guangdong, 518000, China.
Shan Li *People's Hospital of Longhua, Southern Medical University, Shenzhen, Guangdong, 518109, China.
Shiming LiDepartment of Orthopedics Surgery, Gusu School, The Affiliated Suzhou Hospital of Nanjing Medical University, Suzhou Municipal Hospital, Nanjing Medical University, Suzhou, People's Republic of China.
Guoliang ChenDepartment of Orthopedic Surgery, The First Affiliated Hospital, Jinan University, Guangzhou, 510632, China.
Shaoyu LiuGuangdong Provincial Biomedical Innovation Platform of Regeneration and Repair of Spinal Cord and Nerve Injury, Department of Orthopedic Surgery, The Seventh Affiliated Hospital, Sun Yat-Sen University, Shenzhen, Guangdong, 518000, China.
Yuhang LiDepartment of Orthopedics, Third Affiliated Hospital of Sun Yat-Sen University, Guangzhou, Guangdong, 510630, China. hqyylyh@126.com.
Ningning ChenGuangdong Provincial Biomedical Innovation Platform of Regeneration and Repair of Spinal Cord and Nerve Injury, Department of Orthopedic Surgery, The Seventh Affiliated Hospital, Sun Yat-Sen University, Shenzhen, Guangdong, 518000, China. chennn8@mail.sysu.edu.cn.
Bin LiuDepartment of Orthopedics, Third Affiliated Hospital of Sun Yat-Sen University, Guangzhou, Guangdong, 510630, China. liubin6@mail.sysu.edu.cn.

Funding

China Postdoctoral Science Foundation 2021M703720China Postdoctoral Science Foundation GZC20242074National Natural Science Foundation of China 82372400Science, Technology and Innovation Commission of Shenzhen Municipality JCYJ20230807110259002
6 · The paper itself

Abstract

Neural cell death is pivotal in the pathogenesis of spinal cord injury (SCI). Recent studies have revealed a spectrum of cell death modalities in SCI, extending beyond traditional apoptosis and necrosis. Yet, the interplay between these diverse forms of cell death in SCI remains elusive. Is simultaneous intervention in various forms of cell death necessary for formulating effective therapeutic strategies for post-SCI neural cell death? In this study, we analyzed transcriptomic data from a public database, focusing on murine spinal cord tissue after SCI. This analysis identified 33 differentially expressed death-related genes (DEDRGs) active in both the acute and subacute phases of SCI. Enrichment analysis using the KEGG revealed that 15 of these DEDRGs were enriched in pathways related to apoptosis (Mcl1, Ripk1, Ctsb, Fos, Ctsd, Jun, Akt3, Casp8, Mapk8), ferroptosis (Acsl3, Slc39a14, Slc3a2), necroptosis (Ripk1, Casp1, Casp8, Mapk8), and cellular senescence (Map2k3, Akt3, Mapk14). Subsequently, we established a murine SCI model and used WB and IF to confirm the presence of apoptosis, ferroptosis, necroptosis, and cellular senescence at 1, 3, and 7 days after SCI. Furthermore, we utilized a single-cell database to elucidate the communication dynamics between immune and neural cells at these time intervals. This facilitated the identification of pivotal immune-related receptor-ligand pairs and their correlation with key DEDRGs. Our comprehensive analysis sheds light on the complex interplay between the immune cells and neural cells following SCI, underscoring the critical role of receptor-ligand pairs in neural-immune communication. Finally, we selectively targeted these 15 DEDRGs for gene ontology (GO) functional enrichment analysis. We then constructed an integrated mRNA-miRNA-lncRNA regulatory network and predicted potential pharmaceutical interventions. Notably, our findings suggest a prevalent co-occurrence and mutual influence among various cell death forms after SCI. Consequently, we advocate that therapeutic research strategies for SCI should encompass a multi-target approach, addressing several forms of cell death concurrently.

Indexed as

Cell DeathComputational BiologySpinal Cord InjuriesAnimalsApoptosisMiceMice, Inbred C57BLNecroptosisReproducibility of ResultsTranscriptomeApoptosisBioinformatic analysisCell deathCellular senescenceFerroptosisNecroptosisSpinal cord injury

Identifiers

PMID41405788

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.