Evidence map›Paper›PMID 41402457›Full record

ArticleNature genetics2026

JMJD2 regulates enhancer-promoter interactions via biomolecular condensate formation.

Shaoshuai Jiang, Xinyi Liu, Zhuheng Zhang, Mingzhu Yang, Xing Zhu, Lin Ma, Longying Zhao, Xiaoru Ling, Ziqiang Zhou, Ziqiang Wu and 23 more

Abstract read
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In one paragraph

Article in Nature genetics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

33 authors.

Shaoshuai Jiang *Department of Rehabilitation Medicine, The Seventh Affiliated Hospital, Zhongshan School of Medicine, Sun Yat-Sen University, Guangdong, China.
Xinyi Liu *Department of Rehabilitation Medicine, The Seventh Affiliated Hospital, Zhongshan School of Medicine, Sun Yat-Sen University, Guangdong, China.ORCID http://orcid.org/0000-0003-0241-5499
Zhuheng Zhang *Department of Rehabilitation Medicine, The Seventh Affiliated Hospital, Zhongshan School of Medicine, Sun Yat-Sen University, Guangdong, China.
Mingzhu Yang *Department of Rehabilitation Medicine, The Seventh Affiliated Hospital, Zhongshan School of Medicine, Sun Yat-Sen University, Guangdong, China.
Xing ZhuDepartment of Rehabilitation Medicine, The Seventh Affiliated Hospital, Zhongshan School of Medicine, Sun Yat-Sen University, Guangdong, China.
Lin MaDepartment of Rehabilitation Medicine, The Seventh Affiliated Hospital, Zhongshan School of Medicine, Sun Yat-Sen University, Guangdong, China.
Longying ZhaoDepartment of Rehabilitation Medicine, The Seventh Affiliated Hospital, Zhongshan School of Medicine, Sun Yat-Sen University, Guangdong, China.
Xiaoru LingDepartment of Rehabilitation Medicine, The Seventh Affiliated Hospital, Zhongshan School of Medicine, Sun Yat-Sen University, Guangdong, China.
Ziqiang ZhouDepartment of Rehabilitation Medicine, The Seventh Affiliated Hospital, Zhongshan School of Medicine, Sun Yat-Sen University, Guangdong, China.ORCID http://orcid.org/0000-0002-3545-4278
Ziqiang WuDepartment of Rehabilitation Medicine, The Seventh Affiliated Hospital, Zhongshan School of Medicine, Sun Yat-Sen University, Guangdong, China.
Jiale QuDepartment of Rehabilitation Medicine, The Seventh Affiliated Hospital, Zhongshan School of Medicine, Sun Yat-Sen University, Guangdong, China.
Haochen LiDepartment of Rehabilitation Medicine, The Seventh Affiliated Hospital, Zhongshan School of Medicine, Sun Yat-Sen University, Guangdong, China.ORCID http://orcid.org/0009-0001-2882-308X
Jiawei LiangDepartment of Chemistry, Tsinghua-Peking Joint Center for Life Sciences, MOE Key Laboratory of Bioorganic Phosphorus Chemistry and Chemical Biology, Tsinghua University, Beijing, China.
Zhiheng DengDepartment of Chemistry, Tsinghua-Peking Joint Center for Life Sciences, MOE Key Laboratory of Bioorganic Phosphorus Chemistry and Chemical Biology, Tsinghua University, Beijing, China.
Qi TianDepartment of Rehabilitation Medicine, The Seventh Affiliated Hospital, Zhongshan School of Medicine, Sun Yat-Sen University, Guangdong, China.
Xiaona HuangDepartment of Rehabilitation Medicine, The Seventh Affiliated Hospital, Zhongshan School of Medicine, Sun Yat-Sen University, Guangdong, China.
Xianglin HuangDepartment of Rehabilitation Medicine, The Seventh Affiliated Hospital, Zhongshan School of Medicine, Sun Yat-Sen University, Guangdong, China.
Jin TanDepartment of Rehabilitation Medicine, The Seventh Affiliated Hospital, Zhongshan School of Medicine, Sun Yat-Sen University, Guangdong, China.
Jun SunDepartment of Rehabilitation Medicine, The Seventh Affiliated Hospital, Zhongshan School of Medicine, Sun Yat-Sen University, Guangdong, China.ORCID http://orcid.org/0000-0003-1190-3937
Jia WangGMU-GIBH Joint School of Life Sciences, Guangdong-Hong Kong-Macau Joint Laboratory for Cell Fate Regulation and Diseases, Guangzhou Medical University, Guangzhou, China.
Diana GuallarCenter for Research in Molecular Medicine and Chronic Diseases (CiMUS), Universidade de Santiago de Compostela (USC)-Instituto de Investigación Sanitaria, Santiago de Compostela, Spain.
Partha Pratim DasDepartment of Anatomy and Developmental Biology, Monash University, Wellington Road, Clayton, Victoria, Australia.ORCID http://orcid.org/0000-0003-3544-2629
Luca PinelloMolecular Pathology Unit, Center for Cancer Research, Massachusetts General Hospital, Department of Pathology, Harvard Medical School, Boston, MA, USA; Gene Regulation Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Liang WangKey Laboratory of Pesticide & Chemical Biology of Ministry of Education, Hubei Key Laboratory of Genetic Regulation and Integrative Biology, School of Life Sciences, Central China Normal University, Wuhan, China.
Hongfu WuCancer Institute, Cellular Therapeutics School of Medicine, Xuzhou Medical University, Jiangsu, China; School of Basic Medical Sciences, Guangdong Medical University, Guangdong, China.
Dong-Feng HuangDepartment of Rehabilitation Medicine, The Seventh Affiliated Hospital, Zhongshan School of Medicine, Sun Yat-Sen University, Guangdong, China.
Jichang WangDepartment of Rehabilitation Medicine, The Seventh Affiliated Hospital, Zhongshan School of Medicine, Sun Yat-Sen University, Guangdong, China.ORCID http://orcid.org/0000-0002-7027-0298
Hancheng LinDepartment of Rehabilitation Medicine, The Seventh Affiliated Hospital, Zhongshan School of Medicine, Sun Yat-Sen University, Guangdong, China.
Jin BaiCancer Institute, Cellular Therapeutics School of Medicine, Xuzhou Medical University, Jiangsu, China; School of Basic Medical Sciences, Guangdong Medical University, Guangdong, China. bj@xzhmu.edu.cn.
Lili FanGuangzhou Key Laboratory of Formula-Pattern of Traditional Chinese Medicine, School of Traditional Chinese Medicine, Jinan University, Guangzhou, China. fanlili@jnu.edu.cn.
Wei ChiShenzhen Eye Hospital, Shenzhen Eye Medical Center, Southern Medical University, Shenzhen, China. chiwei@mail.sysu.edu.cn.ORCID http://orcid.org/0000-0002-7424-3879
Xue XiaoFrontiers Medical Center, Tianfu Jincheng Laboratory; Department of Gynecology and Obstetrics, West China Second Hospital; West China Biomedical Big Data Center, West China Hospital/West China School of Medicine, Sichuan University, Chengdu, China. xiaoxuela@scu.edu.cn.
Junjun DingDepartment of Rehabilitation Medicine, The Seventh Affiliated Hospital, Zhongshan School of Medicine, Sun Yat-Sen University, Guangdong, China. dingjunj@mail.sysu.edu.cn.ORCID http://orcid.org/0000-0002-9936-882X

Funding

China Postdoctoral Science Foundation 2023M744082Guangdong Innovative and Entrepreneurial Research Team Program 2016ZT06S029National Natural Science Foundation of China (National Science Foundation of China) 32170798National Natural Science Foundation of China (National Science Foundation of China) 32300669National Natural Science Foundation of China (National Science Foundation of China) 323B2026National Natural Science Foundation of China (National Science Foundation of China) 32400561National Natural Science Foundation of China (National Science Foundation of China) 32400659National Natural Science Foundation of China (National Science Foundation of China) 32430031Natural Science Foundation of Guangdong Province (Guangdong Natural Science Foundation) 2023A1515010148Natural Science Foundation of Guangdong Province (Guangdong Natural Science Foundation) 2024A1515011174U.S. Department of Health & Human Services | NIH | National Human Genome Research Institute (NHGRI) 1R35HG010717-01
6 · The paper itself

Abstract

Enhancer-promoter (E-P) interactions regulate transcription during cell fate determination. However, the regulatory mechanisms underlying E-P interactions have remained elusive. Here we present a chromatin-interaction-based proteomic approach, LoopID, to profile proteins (termed the looposome) at certain E-P anchors. We find that histone demethylase JMJD2, a key looposome component, can regulate E-P interactions and the looposome in a catalytic-independent manner through formation of biomolecular condensates. Furthermore, we introduce a system to engineer E-P interactions by assembling JMJD2 condensates at certain genomic loci, enabling construction of cell-type-specific E-P interactions to promote cellular reprogramming into pluripotent or two-cell-like cells. Our findings reveal a noncanonical function of a histone demethylase in regulation of chromatin organization and provide a strategy to regulate cell fate transitions through E-P interactions.

Indexed as

Enhancer Elements, GeneticJumonji Domain-Containing Histone DemethylasesPromoter Regions, GeneticAnimalsChromatinHistonesHumansMiceProteomicsChromatinHistonesJumonji Domain-Containing Histone Demethylases

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.