Evidence map›Paper›PMID 41402360›Full record

ArticleScientific data2025

Chromosome-scale genome assembly of Flemingia macrophylla.

Ting Yuan, Xiangyu Wang, Ying Liang, Ying Hu, Yunfang Zhang, Baoyou Huang, Lingyun Chen, Kunhua Wei

Abstract read
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Ting YuanKey Laboratory of State Administration of Traditional Chinese Medicine for Production & Development of Cantonese Medicinal Materials, School of Chinese Materia Medica, Guangdong Pharmaceutical University, 510006, Guangzhou, China.
Xiangyu WangDepartment of Resources Science of Traditional Chinese Medicines, School of Traditional Chinese Pharmacy, China Pharmaceutical University, 211198, Nanjing, China.
Ying LiangGuangxi Key Laboratory of Medicinal Resources Protection and Genetic Improvement, National Center for TCM Inheritance and Innovation, Guangxi Botanical Garden of Medicinal Plants, 530023, Nanning, China.
Ying HuGuangxi Key Laboratory of Medicinal Resources Protection and Genetic Improvement, National Center for TCM Inheritance and Innovation, Guangxi Botanical Garden of Medicinal Plants, 530023, Nanning, China.
Yunfang ZhangKey Laboratory of State Administration of Traditional Chinese Medicine for Production & Development of Cantonese Medicinal Materials, School of Chinese Materia Medica, Guangdong Pharmaceutical University, 510006, Guangzhou, China.
Baoyou HuangGuangxi Key Laboratory of Medicinal Resources Protection and Genetic Improvement, National Center for TCM Inheritance and Innovation, Guangxi Botanical Garden of Medicinal Plants, 530023, Nanning, China.
Lingyun ChenDepartment of Resources Science of Traditional Chinese Medicines, School of Traditional Chinese Pharmacy, China Pharmaceutical University, 211198, Nanjing, China.ORCID http://orcid.org/0000-0003-3159-6831
Kunhua WeiKey Laboratory of State Administration of Traditional Chinese Medicine for Production & Development of Cantonese Medicinal Materials, School of Chinese Materia Medica, Guangdong Pharmaceutical University, 510006, Guangzhou, China. divinekh@163.com.

Funding

Earmarked Fund for China Agriculture Research System CARS-21National Natural Science Foundation of China (National Science Foundation of China) No. 32370242
6 · The paper itself

Abstract

Flemingia macrophylla, a perennial shrub of the family Fabaceae, possesses pharmacological properties such as anti-inflammatory and antibacterial activities. However, its whole genome has remained largely unexplored. In this study, we generated a chromosome-level genome assembly of F. macrophylla by integrating high-fidelity (HiFi) long-read sequencing generated by Pacific Biosciences (PacBio) and high-throughput chromosome conformation capture (Hi-C) scaffolding. The assembled genome spans 1.13 Gb, with 93.29% of sequences anchored to 11 pseudochromosomes (scaffold N50 = 105.36 Mb), closely matching the estimated genome size based on k-mer analysis (1.07 Gb). Repetitive sequences account for 59.58% of the genome, with long terminal repeat (LTR) retrotransposons representing 39.25% of these elements. A total of 28,548 protein-coding genes were predicted in the assembled genome, of which 27,936 (97.86%) were functionally annotated. This high-quality genome provides a valuable foundation for elucidating medicinal compound biosynthesis, stress resistance mechanisms, and the genetic improvement of F. macrophylla, while also enriching the genomic resources available for the Fabaceae family.

Indexed as

Chromosomes, PlantFabaceaeGenome, PlantRetroelementsTerminal Repeat SequencesRetroelements

Identifiers

PMID41402360
PMCPMC12848004

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.