Evidence map›Paper›PMID 41402319›Full record

ArticleScientific data2025

A chromosome-level reference genome assembly of the giant pangasius (Pangasius sanitwongsei).

Baojiang Gan, Lingjing Wei, Yuanxiong Ma, Feilong Mo, Shan Xiao, Yudian Lu, Kang Liu, Binlan Yang, Sheng Zhang, Haiyang Liu

Abstract readDataset
PubMed Full text at PMC Publisher
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Baojiang GanAquatic Species Introduction and Breeding Center of Guangxi, Nanning, 530031, China.
Lingjing WeiAquatic Species Introduction and Breeding Center of Guangxi, Nanning, 530031, China.
Yuanxiong MaAquatic Species Introduction and Breeding Center of Guangxi, Nanning, 530031, China.
Feilong MoAquatic Species Introduction and Breeding Center of Guangxi, Nanning, 530031, China.
Shan XiaoAquatic Species Introduction and Breeding Center of Guangxi, Nanning, 530031, China.
Yudian LuAquatic Species Introduction and Breeding Center of Guangxi, Nanning, 530031, China.
Kang LiuAquatic Species Introduction and Breeding Center of Guangxi, Nanning, 530031, China.
Binlan YangAquatic Species Introduction and Breeding Center of Guangxi, Nanning, 530031, China.
Sheng ZhangAquatic Species Introduction and Breeding Center of Guangxi, Nanning, 530031, China. 20749078@qq.com.
Haiyang LiuKey Laboratory of Tropical and Subtropical Fishery Resources Application and Cultivation, Ministry of Agriculture and Rural Affairs, Pearl River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Guangzhou, 510380, China. hyliu@prfri.ac.cn.ORCID http://orcid.org/0000-0001-8301-4595

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The giant pangasius (Pangasius sanitwongsei) is a critically endangered freshwater species with considerable ecological and economic significance in Southeast Asia and southern China. However, the lack of a high-quality reference genome has limited studies on its genetic adaptation and conservation strategies. Here, we present a chromosome-scale genome assembly of P. sanitwongsei, generated using PacBio HiFi long-read sequencing and Hi-C chromatin conformation capture. The final assembly spans 808.85 Mb, with a contig N50 of 18.70 Mb and a scaffold N50 of 28.10 Mb, achieving a BUSCO gene completeness of 99.15%. A total of 23,469 protein-coding genes were annotated, and 96.97% of the genes were functionally characterized. This high-quality genomic resource provides crucial insights into the adaptive evolution of Pangasiidae catfishes and offers a valuable foundation for conservation genomics, adaptive evolution, population genetics, and sustainable aquaculture development.

Indexed as

CatfishesChromosomesGenomeAnimalsChinaEndangered Species

Identifiers

PMID41402319
PMCPMC12858891

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.