Evidence map›Paper›PMID 41402282›Full record

ArticleNature communications2025

Rapid culture-free diagnosis of clinical pathogens via integrated microfluidic-Raman micro-spectroscopy.

Yuetao Li, Jiabao Xu, Xiaofei Yi, Xiaobo Li, Yanjun Luo, Andrew Glidle, Phil Summersgill, Simon Allen, Tim Ryan, Xiaochen Liu and 12 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Yuetao Li *James Watt School of Engineering, University of Glasgow, Glasgow, UK.ORCID http://orcid.org/0009-0000-1886-1560
Jiabao Xu *James Watt School of Engineering, University of Glasgow, Glasgow, UK.ORCID http://orcid.org/0000-0002-1285-9408
Xiaofei YiShanghai D-band Medical Technology Co., LTD, Shanghai, P. R. China.
Xiaobo LiJames Watt School of Engineering, University of Glasgow, Glasgow, UK.
Yanjun LuoShanghai D-band Medical Technology Co., LTD, Shanghai, P. R. China.
Andrew GlidleJames Watt School of Engineering, University of Glasgow, Glasgow, UK.
Phil SummersgillEpigem Ltd, Redcar, UK.
Simon AllenEpigem Ltd, Redcar, UK.
Tim RyanEpigem Ltd, Redcar, UK.
Xiaochen LiuDepartment of Infectious Diseases, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, China.
Wei YuDepartment of clinical laboratory, Peking Union Medical College Hospital, Peking Union Medical College, Beijing, P. R. China.
Xiaobing ChuDepartment of clinical laboratory, Peking Union Medical College Hospital, Peking Union Medical College, Beijing, P. R. China.
Shiyu ChenDepartment of clinical laboratory, Peking Union Medical College Hospital, Peking Union Medical College, Beijing, P. R. China.
Qian ZhangDepartment of clinical laboratory, Peking Union Medical College Hospital, Peking Union Medical College, Beijing, P. R. China.
Xiaogang XuHuashan Hospital, Fudan University, Shanghai, P. R. China.ORCID http://orcid.org/0000-0003-1537-0250
Xiaoting HuaDepartment of Infectious Diseases, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, China.ORCID http://orcid.org/0000-0001-8215-916X
Qiwen YangDepartment of clinical laboratory, Peking Union Medical College Hospital, Peking Union Medical College, Beijing, P. R. China.
Julien ReboudJames Watt School of Engineering, University of Glasgow, Glasgow, UK.ORCID http://orcid.org/0000-0002-6879-8405
Yunsong YuDepartment of Infectious Diseases, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, China. yvys119@zju.edu.cn.ORCID http://orcid.org/0000-0003-2903-918X
Wei E HuangDepartment of Engineering Science, University of Oxford, OX1 3PJ, Oxford, UK. wei.huang@eng.ox.ac.uk.ORCID http://orcid.org/0000-0003-1302-6528
Jonathan M CooperJames Watt School of Engineering, University of Glasgow, Glasgow, UK. Jon.Cooper@glasgow.ac.uk.ORCID http://orcid.org/0000-0002-2358-1050
Huabing YinJames Watt School of Engineering, University of Glasgow, Glasgow, UK. huabing.yin@glasgow.ac.uk.ORCID http://orcid.org/0000-0001-7693-377X

Funding

Innovate UK 104984Ministry of Science and Technology of the People's Republic of China (Chinese Ministry of Science and Technology) 2018YFE0101800RCUK | Engineering and Physical Sciences Research Council (EPSRC) EP/M002403/1RCUK | Engineering and Physical Sciences Research Council (EPSRC) EP/M02833X/1RCUK | MRC | Medical Research Foundation MR/Z50628X/1
6 · The paper itself

Abstract

Antimicrobial resistance (AMR) is a critical global health challenge, demanding rapid and accurate diagnostics to guide timely antimicrobial therapy. Current diagnosis is hindered by prolonged culturing and difficulties detecting low pathogen loads. Here, we present a culture-free diagnostic platform that integrates microfluidics, Raman micro-spectroscopy, and deep learning to deliver "sample-to-report" testing within 20 min. The microfluidic enrichment system employs dialysis-dielectrophoresis (DEP) technology to rapidly isolate pathogens directly from clinical samples with a detection limit as low as <2 colony forming unit (CFU)/ml. Combining a single-cell Raman fingerprint database of 342 clinical isolates from 29 bacterial and 7 fungal species with a 1D ResNet deep learning model, our approach achieved 95.1% accuracy in lab settings. Validated in a 305-patient clinical study involving primary urine and other clinical samples, it demonstrated 95.4% agreement with traditional culture methods and 98.5% sensitivity in diagnosing infections. While broader validation is needed for clinical implementation, the integrated, rapid diagnosis pipeline, as well as broad-spectrum detection, offer a promising solution for next-generation diagnostics for combating AMR.

Indexed as

BacteriaBacterial InfectionsMicrofluidicsSpectrum Analysis, RamanDeep LearningFungiHumansLab-On-A-Chip Devices

Identifiers

PMID41402282
PMCPMC12783191

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.