Evidence map›Paper›PMID 41400879›Full record

ArticleGenes & genomics2026

Molecular remodeling of the central auditory pathway in tinnitus revealed by RNA sequencing.

Ha Hyun Song, Byeonghyeon Lee, Hyeon Joon Shin, Ye-Ri Kim, Subi Ham, Un-Kyung Kim, Incheol Seo, Da Jung Jung

Abstract read
PubMed Publisher
In one paragraph

Article in Genes & genomics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Ha Hyun SongDepartment of Biology, College of Natural Sciences, Kyungpook National University, Daegu, Republic of Korea.
Byeonghyeon LeeDaegu-Gyeongbuk Medical Innovation Foundation (KMEDI-Hub), New Drug Development Center, Daegu, Republic of Korea.
Hyeon Joon ShinDepartment of Biology, College of Natural Sciences, Kyungpook National University, Daegu, Republic of Korea.
Ye-Ri KimAdvanced Bio-Resource Research Center, Kyungpook National University, Daegu, Republic of Korea.
Subi HamDepartment of Otorhinolaryngology-Head and Neck Surgery, School of Medicine, Kyungpook National University, 130, Dongdeok-ro, Jung-gu, Daegu, 41944, Republic of Korea.
Un-Kyung KimDepartment of Biology, College of Natural Sciences, Kyungpook National University, Daegu, Republic of Korea.
Incheol SeoDepartment of Immunology, School of Medicine, Kyungpook National University, Daegu, Republic of Korea.
Da Jung JungDepartment of Otorhinolaryngology-Head and Neck Surgery, School of Medicine, Kyungpook National University, 130, Dongdeok-ro, Jung-gu, Daegu, 41944, Republic of Korea. wjddk0731@naver.com.

Funding

Ministry of Science and ICT, South Korea 2022R1A2C3003700Ministry of Science and ICT, South Korea RS-2024-00406555
6 · The paper itself

Abstract

backgroundTinnitus is a complex neurological condition affecting 10-15% of adults worldwide, characterized by phantom auditory perception without external sound sources. While traditional investigations have focused on discrete auditory structures, emerging evidence suggests tinnitus involves broader alterations across central auditory regions.

objectiveThis study employed transcriptomic analysis to investigate molecular mechanisms underlying salicylate-induced tinnitus across multiple brain regions simultaneously.

methodsMale C57BL/6 N mice received daily intraperitoneal injections of sodium salicylate (350 mg/kg) for five consecutive days to induce tinnitus-like behavior, assessed using gap-prepulse inhibition of acoustic startle reflex. RNA sequencing was performed on auditory cortex, inferior colliculus, and cochlear nucleus tissues. Differential gene expression analysis, weighted gene co-expression network analysis, and functional annotation were conducted to identify shared molecular signatures and pathways across auditory centers.

resultsPrincipal component analysis revealed region-specific transcriptomic changes following salicylate treatment. Differential gene expression analysis identified Depp1 and Angptl4 as consistently upregulated genes across multiple brain regions, particularly within the inferior colliculus and cochlear nucleus. Weighted gene co-expression network analysis revealed a 215-gene module increased across all auditory regions in tinnitus mice, with functional annotation indicating enrichment for vasculature-related biological processes. Depp1 emerged as a central hub gene linking oxidative stress responses to autophagy mechanisms.

conclusionThis study shows that tinnitus pathology involves not only neuronal hyperactivity but also oxidative stress, neuroinflammation, and autophagy in the central auditory pathway. Depp1 acts as a molecular hub linking redox imbalance to cellular clearance, highlighting its potential as a therapeutic target and offering new insights for intervention.

Indexed as

Auditory PathwaysTinnitusAnimalsAuditory CortexCochlear NucleusGene Regulatory NetworksInferior ColliculiMaleMiceMice, Inbred C57BLSequence Analysis, RNASodium SalicylateTranscriptomeSodium SalicylateAutophagyDepp1NeuroinflammationTinnitusTranscriptomics

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.