Evidence map›Paper›PMID 41398410›Full record

ArticleNature communications2025

Structure and mechanism of the broad spectrum CRISPR-associated ring nuclease Crn4.

Haotian Chi, Ville Hoikkala, Stephen McMahon, Shirley Graham, Tracey Gloster, Malcolm F White

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Haotian Chi *School of Biology, University of St Andrews, BMS building, North Haugh, St Andrews, Fife, UK.ORCID http://orcid.org/0009-0007-4421-5598
Ville Hoikkala *School of Biology, University of St Andrews, BMS building, North Haugh, St Andrews, Fife, UK.
Stephen McMahonSchool of Biology, University of St Andrews, BMS building, North Haugh, St Andrews, Fife, UK.ORCID http://orcid.org/0000-0003-4273-8364
Shirley GrahamSchool of Biology, University of St Andrews, BMS building, North Haugh, St Andrews, Fife, UK.ORCID http://orcid.org/0000-0002-2608-3815
Tracey GlosterSchool of Biology, University of St Andrews, BMS building, North Haugh, St Andrews, Fife, UK. tmg@st-andrews.ac.uk.ORCID http://orcid.org/0000-0003-4692-2222
Malcolm F WhiteSchool of Biology, University of St Andrews, BMS building, North Haugh, St Andrews, Fife, UK. mfw2@st-andrews.ac.uk.ORCID http://orcid.org/0000-0003-1543-9342

Funding

EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) 101018608
6 · The paper itself

Abstract

Type III CRISPR systems detect the presence of RNA from mobile genetic elements (MGE) in prokaryotes, providing antiviral immunity. On activation, the catalytic Cas10 subunit conjugates ATP to form cyclic oligoadenylate (cOA) signalling molecules that activate ancillary effectors, providing an immune response. Cellular ring nucleases degrade cOA to reset the system. Here, we describe the structure and mechanism of a new family of ring nucleases, Crn4, associated with type III-D CRISPR systems. The crystal structure of Crn4 reveals a small homodimeric protein with a fold unrelated to any known ring nuclease or, indeed, any known protein structure. Crn4 degrades a wide range of cOA species to linear oligoadenylates in vitro and ameliorates type III CRISPR immunity in vivo. Phage and plasmids also encode Crn4 orthologues that may function as anti-CRISPRs. These observations expand our understanding of ring nucleases and reveal a new protein fold for cyclic nucleotide recognition.

Indexed as

CRISPR-Associated ProteinsCRISPR-Cas SystemsEndonucleasesAdenine NucleotidesBacteriophagesCrystallography, X-RayModels, MolecularNucleotides, CyclicOligoribonucleotides2',5'-oligoadenylateAdenine NucleotidesCRISPR-Associated ProteinsEndonucleasesNucleotides, CyclicOligoribonucleotides

Identifiers

PMID41398410
PMCPMC12830947

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.