Evidence map›Paper›PMID 41398052›Full record

ArticleNature cell biology2026

Escape from X inactivation is directly modulated by Xist noncoding RNA.

Antonia Hauth, Jasper Panten, Emma Kneuss, Christel Picard, Nicolas Servant, Isabell Rall, Yuvia A Pérez-Rico, Lena Clerquin, Nila Servaas, Laura Villacorta and 8 more

Abstract read
In one paragraph

Article in Nature cell biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors.

Antonia Hauth *European Molecular Biology Laboratory, Heidelberg, Germany.
Jasper Panten *Division of Regulatory Genomics and Cancer Evolution, German Cancer Research Centre, Heidelberg, Germany.
Emma Kneuss *European Molecular Biology Laboratory, Heidelberg, Germany.ORCID http://orcid.org/0000-0003-0662-8539
Christel PicardEuropean Molecular Biology Laboratory, Heidelberg, Germany.ORCID http://orcid.org/0000-0002-6135-596X
Nicolas ServantBioinformatics and Computational Systems Biology of Cancer, INSERM U900, Paris, France.ORCID http://orcid.org/0000-0003-1678-7410
Isabell RallEuropean Molecular Biology Laboratory, Heidelberg, Germany.
Yuvia A Pérez-RicoEuropean Molecular Biology Laboratory, Heidelberg, Germany.ORCID http://orcid.org/0000-0001-8436-0748
Lena ClerquinEuropean Molecular Biology Laboratory, Heidelberg, Germany.
Nila ServaasEuropean Molecular Biology Laboratory, Heidelberg, Germany.ORCID http://orcid.org/0000-0002-9825-7554
Laura VillacortaEuropean Molecular Biology Laboratory, Heidelberg, Germany.
Ferris JungEuropean Molecular Biology Laboratory, Heidelberg, Germany.
Christy LuongCenter for Personal Dynamic Regulomes, Stanford University, Stanford, CA, USA.
Howard Y ChangCenter for Personal Dynamic Regulomes, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0002-9459-4393
Judith B ZauggEuropean Molecular Biology Laboratory, Heidelberg, Germany.ORCID http://orcid.org/0000-0001-8324-4040
Oliver StegleEuropean Molecular Biology Laboratory, Heidelberg, Germany.ORCID http://orcid.org/0000-0002-8818-7193
Duncan T OdomDivision of Regulatory Genomics and Cancer Evolution, German Cancer Research Centre, Heidelberg, Germany.ORCID http://orcid.org/0000-0001-6201-5599
Edith HeardEuropean Molecular Biology Laboratory, Heidelberg, Germany. edith.heard@crick.ac.uk.ORCID http://orcid.org/0000-0001-8052-7117
Agnese LodaEuropean Molecular Biology Laboratory, Heidelberg, Germany. agnese.loda@embl.de.ORCID http://orcid.org/0000-0001-8109-128X

Funding

Center for Personal Dynamic RegulomesRM1HG007735 · NHGRI · STANFORD UNIVERSITY · PI CHANG, HOWARD Y · 2019 to 2023
$13.8M
EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020) 615584EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020) 788937EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020) 812096EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020) ChromDesignEC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020) IF-838408EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020) XPRESS - AdG671027NHGRI NIH HHS RM1 HG007735Wellcome TrustWellcome Trust 202878
6 · The paper itself

Abstract

In placental XX females, one X chromosome is silenced during a narrow developmental time window by X-chromosome inactivation, which is mediated by Xist noncoding RNA. Although most X-linked genes are silenced during X-chromosome inactivation, some genes can escape. Here, by increasing its endogenous level, we show that Xist RNA can silence escapees well beyond early embryogenesis both in vitro, in differentiated cells, as well as in vivo, in mouse pre- and post-implantation embryos. We further demonstrate that Xist RNA plays a role in eliminating topologically associating domain-like structures spanning clusters of escapees, and this is dependent on SPEN. The function of Xist in silencing escapees and eliminating topological domains is initially fully reversible, but sustained Xist upregulation leads to irreversible silencing and CpG island DNA methylation of escapees. Thus, gene activity and three-dimensional topology of the inactive X chromosome are directly controlled by Xist, well beyond an early developmental time window.

Indexed as

RNA, Long NoncodingRNA, UntranslatedX Chromosome InactivationAnimalsCpG IslandsDNA-Binding ProteinsDNA MethylationFemaleGene Expression Regulation, DevelopmentalGene SilencingMaleMicePregnancyRNA-Binding ProteinsX ChromosomeDNA-Binding ProteinsRNA-Binding ProteinsRNA, Long NoncodingRNA, UntranslatedSpen protein, mouseXIST non-coding RNA

Identifiers

PMID41398052
PMCPMC12807875

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.