Evidence map›Paper›PMID 41397121›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2025

Interstep compatibility of a model for the prebiotic synthesis of RNA consistent with Hadean natural history.

Yuta Hirakawa, Hyo-Joong Kim, Yoshihiro Furukawa, Clay Abraham, Tzu-Wei Peng, Elisa Biondi, Steven A Benner

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yuta HirakawaFoundation for Applied Molecular Evolution, Alachua, FL 32615.ORCID 0009-0002-5323-4276
Hyo-Joong KimFoundation for Applied Molecular Evolution, Alachua, FL 32615.
Yoshihiro FurukawaDepartment of Earth Science, Tohoku University, Sendai 980-8578, Japan.ORCID 0000-0001-7241-530X
Clay AbrahamFoundation for Applied Molecular Evolution, Alachua, FL 32615.ORCID 0000-0002-7126-5896
Tzu-Wei PengFoundation for Applied Molecular Evolution, Alachua, FL 32615.ORCID 0009-0000-1704-9335
Elisa BiondiFoundation for Applied Molecular Evolution, Alachua, FL 32615.ORCID 0000-0002-3660-2607
Steven A BennerFoundation for Applied Molecular Evolution, Alachua, FL 32615.ORCID 0000-0002-3318-9917

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Models for prebiotic syntheses often have many steps, each separately validated by laboratory experiments. The challenge then asks whether these steps work together in natural geological environments, absent human intervention. Here, we analyze a six-step Discontinuous Synthesis Model (DSM) for the prebiotic formation of RNA, proposed to be the first informational molecule to support Darwinian evolution, and life, on Earth and/or Mars. DSM requires that borate in multiple steps guide the formation of pentoses from simple carbohydrates and control phosphorylation, in all cases by binding adjacent HO-groups on key intermediates. However, adjacent HO-groups must react in two other steps, which borate might inhibit. Experiments here show that borate does not inhibit these two other steps, but rather facilitates them. This makes the six-step DSM a "no human intervention" route from simple precursors (1 to 3 carbons, 0 to 2 nitrogens) to oligomeric RNA with predominately 3',5'-linkages at least 6 nucleotides long, but possibly much longer. The process i) exploits privileged chemistry in ii) intermittently irrigated aquifers constrained by basalt that iii) have borate iv) above a redox-neutral mantle v) having access to an atmosphere transiently reduced by a Vesta-sized impactor. In a possible coincidence, such an impact occurred most likely ca. 4.3 billion years ago (Ga), ~100 Mya before some molecular clocks date the divergence of the three kingdoms of life on Earth (4.2 Ga), and ca. 200 Mya before isotopically "light" carbon is reported in zircons dated at 4.1 Ga. This carbon may be the oldest trace of life ever proposed.

Indexed as

Origin of LifePrebioticsRNABoratesEarth, PlanetEvolution, ChemicalBoratesPrebioticsRNADiscontinuous Synthesis ModelHadean geologyMarsprebiotic chemistryRNA

Identifiers

PMID41397121
PMCPMC12745811

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.