Evidence map›Paper›PMID 41396993›Full record

ArticleJournal of visualized experiments : JoVE2025

Spatial Molecular Imaging of the Glycome Using Mass Spectrometry.

Roberto A Ribas, Franca Bucco Paolasso, Alison M Ryan, Manuel R Sanchez, Charles M Soto, Scarlett I Caffee, Reece C Larson, Derek B Allison, Matthew S Gentry, Ramon C Sun and 1 more

Abstract readVideo-Audio Media
In one paragraph

Article in Journal of visualized experiments : JoVE, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Mass Spectrometry-Based Spatial Imaging of the Cochlea.Journal of the American Society for Mass Spectrometry · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Roberto A RibasCenter for Advanced Spatial Biomolecule Research (CASBR), University of Florida, Gainesville; Department of Biochemistry and Molecular Biology, University of Florida, Gainesville.
Franca Bucco PaolassoCenter for Advanced Spatial Biomolecule Research (CASBR), University of Florida, Gainesville; Department of Biochemistry and Molecular Biology, University of Florida, Gainesville.
Alison M RyanCenter for Advanced Spatial Biomolecule Research (CASBR), University of Florida, Gainesville; Department of Biochemistry and Molecular Biology, University of Florida, Gainesville.
Manuel R SanchezCenter for Advanced Spatial Biomolecule Research (CASBR), University of Florida, Gainesville; Department of Biochemistry and Molecular Biology, University of Florida, Gainesville.
Charles M SotoCenter for Advanced Spatial Biomolecule Research (CASBR), University of Florida, Gainesville; Department of Biochemistry and Molecular Biology, University of Florida, Gainesville.
Scarlett I CaffeeDepartment of Biochemistry and Molecular Biology, University of Florida, Gainesville.
Reece C LarsonCenter for Advanced Spatial Biomolecule Research (CASBR), University of Florida, Gainesville; Department of Biochemistry and Molecular Biology, University of Florida, Gainesville.
Derek B AllisonMarkey Cancer Center, University of Kentucky; Department of Pathology & Laboratory Medicine, University of Kentucky.
Matthew S GentryCenter for Advanced Spatial Biomolecule Research (CASBR), University of Florida, Gainesville; Department of Biochemistry and Molecular Biology, University of Florida, Gainesville.
Ramon C SunCenter for Advanced Spatial Biomolecule Research (CASBR), University of Florida, Gainesville; Department of Biochemistry and Molecular Biology, University of Florida, Gainesville.
Craig W Vander KooiCenter for Advanced Spatial Biomolecule Research (CASBR), University of Florida, Gainesville; Department of Biochemistry and Molecular Biology, University of Florida, Gainesville; craig.vanderkooi@ufl.edu.

Funding

University of Kentucky Markey Cancer Center Support Grant ECIA SupplementP30CA177558 · NCI · UNIVERSITY OF KENTUCKY · PI Jennifer F Rogers · 2013 to 2026
$38.3M
Brain Glycogen-Metabolism,Mechanisms, and Therapeutic PotentialR35NS116824 · NINDS · UNIVERSITY OF KENTUCKY · PI Matthew S. Gentry · 2020 to 2026
$8.2M
Brain Glucose Deficiency: Mechanisms and ModulationRM1NS133593 · NINDS · WEILL MEDICAL COLL OF CORNELL UNIV · PI Joseph J. Pancrazio, Juan M. Pascual · 2023 to 2026
$5.3M
Deciphering the Glycan Code in Human Alzheimer’s Disease BrainR01AG078702 · NIA · UNIVERSITY OF KENTUCKY · PI Peggi M Angel, Sean Curtis Bendall · 2022 to 2026
$3.8M
GIPC3, multifunctional myosin adaptor in mammalian auditory hair cellsR01DC019054 · NIDCD · UNIVERSITY OF KENTUCKY · PI FROLENKOV, GREGORY I, VANDER KOOI, CRAIG · 2020 to 2024
$2.8M
Aberrant Glycogen in Lung Adenocarcinoma TumorigenesisR01CA266004 · NCI · UNIVERSITY OF KENTUCKY · PI Matthew S. Gentry, Ramon C. Sun · 2022 to 2026
$2.6M
Aberrant Glycogen Modulates Cerebral Glucose Metabolism in Aging and Alzheimer's DiseaseR01AG066653 · NIA · UNIVERSITY OF KENTUCKY · PI SUN, RAMON C. · 2020 to 2024
$1.9M
Targeting Glycogen Metabolism in Ewing's Sarcoma: Diagnostic, Prognostic, and Therapeutic ApplicationsR01CA288696 · NCI · UNIVERSITY OF FLORIDA · PI Matthew S. Gentry, Ramon C. Sun · 2024 to 2026
$1.8M
NCI NIH HHS P30 CA177558NCI NIH HHS R01 CA266004NCI NIH HHS R01 CA288696NIA NIH HHS R01 AG066653NIA NIH HHS R01 AG078702NIDCD NIH HHS R01 DC019054NINDS NIH HHS R35 NS116824NINDS NIH HHS RM1 NS133593
6 · The paper itself

Abstract

The spatial organization of the glycome within tissues is key to the molecular basis for physiological function. The diverse and dynamic glycome is critical for fundamental cellular processes, including metabolism, signaling, and adhesion. Innovations in spatial biology have ushered in new avenues for spatial molecular imaging of diverse glycome classes. Here, we describe an optimized protocol for spatial biomolecular imaging of the glycome in fresh-frozen mouse liver. The workflow comprises (1) rapid harvesting and freezing, (2) cryostat sectioning at optimal thickness and position, (3) tissue preparation and on-tissue enzyme digestion using carbohydrate-active enzymes, (4) matrix application and data acquisition by matrix-assisted laser desorption/ionization mass spectrometry imaging (MALDI-MSI), and (5) data processing and visualization to place the findings in biological context. Use of this approach allows acquisition of detailed spatial maps of N-linked glycans and glycogen, revealing key physiological and cellular features. These data allow the definition of key spatial glycomic heterogeneity associated with liver function and dysfunction. This workflow enables highly reproducible and sensitive spatial glycomics of the mouse liver. Additionally, it is readily adaptable to other tissues or species, facilitating novel spatial insights into glycome biology in health and disease.

Indexed as

GlycomicsMolecular ImagingSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationAnimalsCryoultramicrotomyLiverMiceMice, Inbred C57BLPolysaccharidesPolysaccharides

Identifiers

PMID41396993
PMCPMC12971132

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.