Evidence map›Paper›PMID 41394720›Full record

ArticlebioRxiv : the preprint server for biology2025

Use of High Pressure NMR Spectroscopy to Rapidly Identify Proteins with Internal Ligand-Binding Voids.

Donald Gagné, Roksana Azad, James M Aramini, Xingjian Xu, Eta A Isiorho, Uthama R Edupuganti, Justin P Williams, Leandro Pimentel Marcelino, Bruce A Johnson, Kazuyuki Akasaka and 1 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Donald GagnéStructural Biology Initiative, CUNY Advanced Science Research Center, New York, NY 10031, USA.ORCID 0000-0002-3938-6567
Roksana AzadStructural Biology Initiative, CUNY Advanced Science Research Center, New York, NY 10031, USA.ORCID 0000-0001-9909-2889
James M AraminiStructural Biology Initiative, CUNY Advanced Science Research Center, New York, NY 10031, USA.ORCID 0000-0001-8926-4210
Xingjian XuStructural Biology Initiative, CUNY Advanced Science Research Center, New York, NY 10031, USA.ORCID 0000-0002-9609-4755
Eta A IsiorhoStructural Biology Initiative, CUNY Advanced Science Research Center, New York, NY 10031, USA.ORCID 0000-0002-6242-9297
Uthama R EdupugantiStructural Biology Initiative, CUNY Advanced Science Research Center, New York, NY 10031, USA.ORCID 0000-0003-0571-4101
Justin P WilliamsStructural Biology Initiative, CUNY Advanced Science Research Center, New York, NY 10031, USA.ORCID 0000-0003-4108-5808
Leandro Pimentel MarcelinoStructural Biology Initiative, CUNY Advanced Science Research Center, New York, NY 10031, USA.ORCID 0000-0001-6067-0725
Bruce A JohnsonStructural Biology Initiative, CUNY Advanced Science Research Center, New York, NY 10031, USA.ORCID 0000-0001-8445-5368
Kazuyuki AkasakaKeihanna Academy of Science & Culture, Kansai Science City, Kyoto 619-0237, Japan.ORCID 0000-0002-9611-9086
Kevin H GardnerStructural Biology Initiative, CUNY Advanced Science Research Center, New York, NY 10031, USA.ORCID 0000-0002-8671-2556

Funding

User Training and OutreachP30GM124165 · NIGMS · CORNELL UNIVERSITY · PI Nozomi Ando, J Christopher Fromme · 2018 to 2026
$34.2M
Center for Structural Biology of HIV RNAU54AI170660 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ALICE TELESNITSKY · 2022 to 2026
$32.1M
MARC HONORS UNDERGRADUATE RESEARCH TRAINING PROGRAMT34GM007639 · NIGMS · CITY COLLEGE OF NEW YORK · PI LEVITT, JONATHAN B · 1985 to 2022
$4.7M
Summer Undergraduate Research Support - Ms. Anastasiia FisiukR01GM106239 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI GARDNER, KEVIN H · 2013 to 2024
$4.5M
NMRFx: An Integrated software suite for macromolecular NMR analysisR01GM123012 · NIGMS · ADVANCED SCIENCE RESEARCH CENTER · PI JOHNSON, BRUCE A · 2017 to 2025
$2.6M
Pixel Array Detector for Macromolecular CrystallographyS10OD021527 · OD · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2016 to 2016
$2.0M
PAS proteins: Study and application of signaling mechanismsR35GM156296 · NIGMS · ADVANCED SCIENCE RESEARCH CENTER · PI Kevin H Gardner · 2025 to 2026
$1.1M
Elucidating the structural dynamics of hPASK, a PAS regulated mammalian kinaseF31GM142258 · NIGMS · ADVANCED SCIENCE RESEARCH CENTER · PI AZAD, ROKSANA · 2021 to 2023
$82k
NIAID NIH HHS U54 AI170660NIGMS NIH HHS F31 GM142258NIGMS NIH HHS P30 GM124165NIGMS NIH HHS R01 GM106239NIGMS NIH HHS R01 GM123012NIGMS NIH HHS R35 GM156296NIGMS NIH HHS T34 GM007639NIH HHS S10 OD021527
6 · The paper itself

Abstract

Small molecule binding within internal cavities provides a way to control protein function and structure, as exhibited in numerous natural and artificial settings. Unfortunately, most ways to identify suitable cavities require high-resolution structures

Indexed as

Biological Sciences / Biophysics and Computational Biologyhigh pressure NMRligand bindingprotein cavities

Identifiers

PMID41394720
PMCPMC12697675

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.