Evidence map›Paper›PMID 41394631›Full record

ArticlebioRxiv : the preprint server for biology2025

Key residues in SARS-CoV-2 NSP3 hyper variable region are necessary to modulate early stress granule activity.

R Elias Alvarado, Kumari G Lokugamage, Dimitriya Garvanska, Leah K Estes, Yani Ahearn, Alyssa M McLeland, Arian Moayyed, Jennifer Chen, Blanca Lopez Mendez, Jessica A Plante and 4 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors.

R Elias AlvaradoDepartment of Microbiology & Immunology, University of Texas Medical Branch, Galveston, TX, United States.
Kumari G LokugamageDepartment of Microbiology & Immunology, University of Texas Medical Branch, Galveston, TX, United States.
Dimitriya GarvanskaNovo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.
Leah K EstesDepartment of Microbiology & Immunology, University of Texas Medical Branch, Galveston, TX, United States.
Yani AhearnDepartment of Microbiology & Immunology, University of Texas Medical Branch, Galveston, TX, United States.
Alyssa M McLelandDepartment of Microbiology & Immunology, University of Texas Medical Branch, Galveston, TX, United States.
Arian MoayyedDepartment of Microbiology & Immunology, University of Texas Medical Branch, Galveston, TX, United States.
Jennifer ChenDepartment of Microbiology & Immunology, University of Texas Medical Branch, Galveston, TX, United States.
Blanca Lopez MendezNovo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.
Jessica A PlanteDepartment of Microbiology & Immunology, University of Texas Medical Branch, Galveston, TX, United States.
Kenneth S PlanteDepartment of Microbiology & Immunology, University of Texas Medical Branch, Galveston, TX, United States.
Bryan A JohnsonDepartment of Microbiology & Immunology, University of Texas Medical Branch, Galveston, TX, United States.
Jakob NilssonNovo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.
Vineet D MenacheryDepartment of Microbiology & Immunology, University of Texas Medical Branch, Galveston, TX, United States.

Funding

Virology CoreU19AI171413 · NIAID · UNIVERSITY OF TEXAS MED BR GALVESTON · PI XIE, XUPING · 2022 to 2023
$75.0M
EMERGING AND TROPICAL INFECTIOUS DISEASEST32AI007526 · NIAID · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI SOONG, LYNN · 1997 to 2025
$3.1M
Identifying host and viral correlates for coronavirus pathogenesisR01AI153602 · NIAID · UNIVERSITY OF TEXAS MED BR GALVESTON · PI JOHNSON, BRYAN A · 2020 to 2023
$2.0M
The Host Genetics of Age-Dependent SusceptibilityR21AI145400 · NIAID · UNIVERSITY OF TEXAS MED BR GALVESTON · PI MENACHERY, VINEET D · 2020 to 2021
$451k
NIAID NIH HHS R01 AI153602NIAID NIH HHS R21 AI145400NIAID NIH HHS T32 AI007526NIAID NIH HHS U19 AI171413
6 · The paper itself

Abstract

Antagonism of the host responses that limits viral replication is critical to the success of infection. Recently, we identified that the hypervariable region (HVR) of SARS-CoV-2 NSP3 binds to FXR1 and disrupts stress granule formation during the early stages of infection. Despite variation across the rest of the HVR, a 20-amino acid region, highly conserved in the Sarbecovirus family, is required for NSP3-FXR1 binding, but the critical residues remained unresolved. In this study, we explore the individual residues in NSP3 driving FXR1 binding and determine their impact on viral replication, pathogenesis, and stress granule formation. Our results indicate that the tyrosine at position 138 (Y138) and a phenylalanine at position 145 (F145) are required for FXR1 binding and affinity. Using reverse genetics, we showed mutating NSP3 Y138A/F145A (YF mutant) reduced viral replication

Indexed as

CoronavirusFXR1NSP3NucleocapsidSARS-CoV-2Stress Granules

Identifiers

PMID41394631
PMCPMC12697736

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.